diff options
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 165 |
1 files changed, 157 insertions, 8 deletions
@@ -2,41 +2,190 @@ Loading required package: parallel ℹ Testing mkin ✔ | F W S OK | Context + +⠏ | 0 | AIC +⠏ | 0 | AIC calculation ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.5s] + +⠏ | 0 | analytical +⠏ | 0 | Analytical solutions for coupled models +⠋ | 1 | Analytical solutions for coupled models +⠙ | 2 | Analytical solutions for coupled models +⠹ | 3 | Analytical solutions for coupled models +⠸ | 4 | Analytical solutions for coupled models +⠼ | 5 | Analytical solutions for coupled models +✔ | 5 | Analytical solutions for coupled models [3.4s] + +⠏ | 0 | aw +⠏ | 0 | Calculation of Akaike weights ✔ | 5 | Calculation of Akaike weights + +⠏ | 0 | CAKE_export +⠏ | 0 | Export dataset for reading into CAKE ✔ | 2 | Export dataset for reading into CAKE + +⠏ | 0 | confidence +⠏ | 0 | Confidence intervals and p-values +⠼ | 5 | Confidence intervals and p-values +⠋ | 11 | Confidence intervals and p-values +⠙ | 12 | Confidence intervals and p-values ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 14 | Error model fitting [5.0s] + +⠏ | 0 | error_models +⠏ | 0 | Error model fitting +⠹ | 3 | Error model fitting +⠸ | 4 | Error model fitting +⠼ | 5 | Error model fitting +⠴ | 6 | Error model fitting +⠧ | 8 | Error model fitting +⠏ | 10 | Error model fitting +⠙ | 12 | Error model fitting +⠸ | 14 | Error model fitting +✔ | 14 | Error model fitting [4.9s] + +⠏ | 0 | f_time_norm +⠏ | 0 | Time step normalisation ✔ | 5 | Time step normalisation + +⠏ | 0 | FOCUS_chi2_error_level +⠏ | 0 | Calculation of FOCUS chi2 error levels +⠙ | 2 | Calculation of FOCUS chi2 error levels +⠸ | 4 | Calculation of FOCUS chi2 error levels ✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] + +⠏ | 0 | FOCUS_D_UBA_expertise +⠏ | 0 | Results for FOCUS D established in expertise for UBA (Ranke 2014) +⠋ | 1 | Results for FOCUS D established in expertise for UBA (Ranke 2014) +⠧ | 8 | Results for FOCUS D established in expertise for UBA (Ranke 2014) +⠏ | 10 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] + +⠏ | 0 | from_max_mean +⠏ | 0 | Test fitting the decline of metabolites from their maximum +⠹ | 3 | Test fitting the decline of metabolites from their maximum +⠸ | 4 | Test fitting the decline of metabolites from their maximum ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] + +⠏ | 0 | logistic +⠏ | 0 | Fitting the logistic model +⠋ | 1 | Fitting the logistic model ✔ | 1 | Fitting the logistic model [0.2s] -✔ | 1 35 | Nonlinear mixed-effects models [26.8s] + +⠏ | 0 | mixed +⠏ | 0 | Nonlinear mixed-effects models +⠙ | 2 | Nonlinear mixed-effects models +⠹ | 3 | Nonlinear mixed-effects models +⠸ | 4 | Nonlinear mixed-effects models +⠏ | 10 | Nonlinear mixed-effects models +⠙ | 12 | Nonlinear mixed-effects models +⠧ | 18 | Nonlinear mixed-effects models +⠙ | 22 | Nonlinear mixed-effects models +⠹ | 23 | Nonlinear mixed-effects models +✔ | 1 35 | Nonlinear mixed-effects models [26.6s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits Reason: Fitting with saemix takes around 10 minutes when using deSolve ──────────────────────────────────────────────────────────────────────────────── + +⠏ | 0 | mkinds +⠏ | 0 | Test dataset classes mkinds and mkindsg ✔ | 2 | Test dataset classes mkinds and mkindsg + +⠏ | 0 | mkinfit_errors +⠏ | 0 | Special cases of mkinfit calls +⠇ | 9 | Special cases of mkinfit calls +⠏ | 10 | Special cases of mkinfit calls ✔ | 10 | Special cases of mkinfit calls [0.4s] -✔ | 1 | mkinfit features [0.4s] + +⠏ | 0 | mkinfit +⠏ | 0 | mkinfit features +⠋ | 1 | mkinfit features +✔ | 1 | mkinfit features [0.3s] + +⠏ | 0 | mkinmod +⠏ | 0 | mkinmod model generation and printing +⠧ | 8 | mkinmod model generation and printing ✔ | 8 | mkinmod model generation and printing [0.2s] + +⠏ | 0 | mkinpredict_SFO_SFO +⠏ | 0 | Model predictions with mkinpredict +⠋ | 1 | Model predictions with mkinpredict ✔ | 3 | Model predictions with mkinpredict [0.3s] + +⠏ | 0 | nafta +⠏ | 0 | Evaluations according to 2015 NAFTA guidance +⠙ | 2 | Evaluations according to 2015 NAFTA guidance +⠇ | 9 | Evaluations according to 2015 NAFTA guidance +⠏ | 10 | Evaluations according to 2015 NAFTA guidance ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.2s] + +⠏ | 0 | nlme +⠏ | 0 | Nonlinear mixed-effects models with nlme +⠋ | 1 | Nonlinear mixed-effects models with nlme +⠙ | 2 | Nonlinear mixed-effects models with nlme +⠼ | 5 | Nonlinear mixed-effects models with nlme +⠴ | 6 | Nonlinear mixed-effects models with nlme +⠧ | 8 | Nonlinear mixed-effects models with nlme +⠇ | 9 | Nonlinear mixed-effects models with nlme +✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s] + +⠏ | 0 | nlmixr +⠏ | 0 | plot +⠏ | 0 | Plotting +⠋ | 1 | Plotting +⠇ | 9 | Plotting +⠹ | 13 | Plotting +⠼ | 15 | Plotting ✔ | 16 | Plotting [1.3s] + +⠏ | 0 | residuals +⠏ | 0 | Residuals extracted from mkinfit models ✔ | 4 | Residuals extracted from mkinfit models + +⠏ | 0 | schaefer07_complex_case +⠏ | 0 | Complex test case from Schaefer et al. (2007) Piacenza paper +⠋ | 1 | Complex test case from Schaefer et al. (2007) Piacenza paper ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s] -✔ | 7 | Fitting the SFORB model [3.8s] + +⠏ | 0 | SFORB +⠏ | 0 | Fitting the SFORB model +⠋ | 1 | Fitting the SFORB model +⠼ | 5 | Fitting the SFORB model +✔ | 7 | Fitting the SFORB model [3.9s] + +⠏ | 0 | summary_old_objects +⠏ | 0 | Summaries of old mkinfit objects ✔ | 1 | Summaries of old mkinfit objects + +⠏ | 0 | summary +⠏ | 0 | Summary +⠸ | 4 | Summary ✔ | 4 | Summary [0.1s] + +⠏ | 0 | synthetic_data_for_UBA_2014 +⠏ | 0 | Results for synthetic data established in expertise for UBA (Ranke 2014) +⠋ | 1 | Results for synthetic data established in expertise for UBA (Ranke 2014) +⠹ | 3 | Results for synthetic data established in expertise for UBA (Ranke 2014) ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3s] -✔ | 9 | Hypothesis tests [8.6s] + +⠏ | 0 | tests +⠏ | 0 | Hypothesis tests +⠼ | 5 | Hypothesis tests +⠴ | 6 | Hypothesis tests +⠧ | 8 | Hypothesis tests +⠇ | 9 | Hypothesis tests +✔ | 9 | Hypothesis tests [8.5s] + +⠏ | 0 | twa +⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs) +⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs) +⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs) +⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs) +⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs) ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 69.5 s +Duration: 69.0 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting with saemix takes around 10 minutes when using deSolve (1) |