diff options
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 45 |
1 files changed, 24 insertions, 21 deletions
@@ -3,17 +3,17 @@ Loading required package: parallel ℹ Testing mkin ✔ | OK F W S | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.3 s] +✔ | 5 | Analytical solutions for coupled models [3.5 s] ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE -✔ | 12 | Confidence intervals and p-values [1.3 s] +✔ | 12 | Confidence intervals and p-values [1.0 s] ✔ | 14 | Error model fitting [4.7 s] ✔ | 5 | Time step normalisation -✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] +✔ | 4 | Calculation of FOCUS chi2 error levels [0.6 s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] -✔ | 35 1 | Nonlinear mixed-effects models [27.1 s] +✔ | 35 1 | Nonlinear mixed-effects models [26.9 s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits Reason: Fitting with saemix takes around 10 minutes when using deSolve @@ -21,33 +21,36 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 2 | Test dataset classes mkinds and mkindsg ✔ | 10 | Special cases of mkinfit calls [0.4 s] ✔ | 1 | mkinfit features [0.3 s] -✔ | 8 | mkinmod model generation and printing [0.3 s] +✔ | 8 | mkinmod model generation and printing [0.2 s] ✔ | 3 | Model predictions with mkinpredict [0.3 s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7 s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.1 s] -✖ | 14 2 | Plotting [1.9 s] +✔ | 14 2 | Evaluations according to 2015 NAFTA guidance [1.3 s] ──────────────────────────────────────────────────────────────────────────────── -Failure (test_plot.R:40:5): Plotting mkinfit, mmkin and mixed model objects is reproducible -Figures don't match: mixed-model-fit-for-saem-object-with-saemix-transformations.svg - - -Failure (test_plot.R:55:5): Plotting mkinfit, mmkin and mixed model objects is reproducible -Figures don't match: mixed-model-fit-for-saem-object-with-mkin-transformations.svg +Skip (test_nafta.R:25:5): Test data from Appendix B are correctly evaluated +Reason: getRversion() >= "4.1.0" is TRUE +Skip (test_nafta.R:53:5): Test data from Appendix D are correctly evaluated +Reason: getRversion() >= "4.1.0" is TRUE +──────────────────────────────────────────────────────────────────────────────── +✔ | 9 | Nonlinear mixed-effects models with nlme [8.1 s] +✔ | 0 1 | Plotting [0.8 s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_plot.R:18:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Reason: getRversion() >= "4.1.0" is TRUE ──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] -✔ | 7 | Fitting the SFORB model [3.9 s] +✔ | 7 | Fitting the SFORB model [3.8 s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1 s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] -✔ | 9 | Hypothesis tests [8.2 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s] +✔ | 9 | Hypothesis tests [8.5 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 70.0 s +Duration: 68.2 s ── Skipped tests ────────────────────────────────────────────────────────────── -● Fitting with saemix takes around 10 minutes when using deSolve (1) +• Fitting with saemix takes around 10 minutes when using deSolve (1) +• getRversion() >= "4.1.0" is TRUE (3) -[ FAIL 2 | WARN 0 | SKIP 1 | PASS 204 ] +[ FAIL 0 | WARN 0 | SKIP 4 | PASS 188 ] |