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-rw-r--r--test.log51
1 files changed, 33 insertions, 18 deletions
diff --git a/test.log b/test.log
index c51d06b8..2db18301 100644
--- a/test.log
+++ b/test.log
@@ -1,38 +1,53 @@
Loading mkin
Testing mkin
✔ | OK F W S | Context
-✔ | 5 | Calculation of Akaike weights
✔ | 2 | Export dataset for reading into CAKE
-✔ | 10 | Confidence intervals and p-values [9.7 s]
-✔ | 14 | Error model fitting [36.9 s]
-✔ | 4 | Calculation of FOCUS chi2 error levels [2.2 s]
-✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.3 s]
-✔ | 6 | Test fitting the decline of metabolites from their maximum [0.7 s]
-✔ | 1 | Fitting the logistic model [0.9 s]
+✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.8 s]
+✔ | 4 | Calculation of FOCUS chi2 error levels [2.3 s]
+✔ | 4 | Fitting the SFORB model [1.7 s]
+✔ | 5 | Calculation of Akaike weights
+✔ | 10 | Confidence intervals and p-values [10.2 s]
+✔ | 14 | Error model fitting [40.7 s]
+✔ | 6 | Test fitting the decline of metabolites from their maximum [0.8 s]
+✔ | 1 | Fitting the logistic model [1.0 s]
✔ | 1 | Test dataset class mkinds used in gmkin
-✔ | 12 | Special cases of mkinfit calls [2.4 s]
+✖ | 11 1 | Special cases of mkinfit calls [2.3 s]
+────────────────────────────────────────────────────────────────────────────────
+test_mkinfit_errors.R:64: failure: We get reproducible output if quiet = FALSE
+Results have changed from known value recorded in 'DFOP_FOCUS_C_messages.txt'.
+2/165 mismatches
+x[84]: "Sum of squared residuals at call 57: 4.364077"
+y[84]: "Sum of squared residuals at call 57: 4.364078"
+
+x[105]: "85.00134 -0.7776046 -4.025878 1.248775 "
+y[105]: "85.00135 -0.7776046 -4.025878 1.248775 "
+────────────────────────────────────────────────────────────────────────────────
✔ | 9 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.3 s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.1 s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3 s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.3 s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]
✔ | 3 | Summary
-✔ | 11 | Plotting [0.6 s]
+✖ | 10 1 | Plotting [0.6 s]
+────────────────────────────────────────────────────────────────────────────────
+test_plots_summary_twa.R:118: failure: Plotting mkinfit and mmkin objects is reproducible
+Figures don't match: plot-errmod-with-sfo-lin-a-obs.svg
+
+────────────────────────────────────────────────────────────────────────────────
✔ | 4 | AIC calculation
✔ | 2 | Residuals extracted from mkinfit models
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.3 s]
-✔ | 4 | Fitting the SFORB model [1.7 s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.6 s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.2 s]
-✔ | 7 1 | Hypothesis tests [32.3 s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.4 s]
+✔ | 7 1 | Hypothesis tests [33.6 s]
────────────────────────────────────────────────────────────────────────────────
test_tests.R:60: skip: We can do a likelihood ratio test using an update specification
Reason: This errors out if called by testthat while it works in a normal R session
────────────────────────────────────────────────────────────────────────────────
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 110.2 s
+Duration: 117.3 s
-OK: 138
-Failed: 0
+OK: 136
+Failed: 2
Warnings: 0
Skipped: 1

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