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Diffstat (limited to 'test_dev.log')
| -rw-r--r-- | test_dev.log | 69 |
1 files changed, 47 insertions, 22 deletions
diff --git a/test_dev.log b/test_dev.log index c57bb958..df159d1e 100644 --- a/test_dev.log +++ b/test_dev.log @@ -1,37 +1,62 @@ Loading mkin +Loading required package: parallel Testing mkin ✔ | OK F W S | Context -✔ | 4 | AIC calculation +✔ | 5 | AIC calculation ✔ | 2 | Export dataset for reading into CAKE -✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.9 s] -✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s] -✔ | 7 | Fitting the SFORB model [3.1 s] -✔ | 5 | Analytical solutions for coupled models [2.8 s] +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s] +✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] +✔ | 7 | Fitting the SFORB model [3.4 s] +✔ | 5 | Analytical solutions for coupled models [3.1 s] ✔ | 5 | Calculation of Akaike weights -✔ | 10 | Confidence intervals and p-values [0.9 s] -✔ | 14 | Error model fitting [3.8 s] +✔ | 14 | Confidence intervals and p-values [1.2 s] +✔ | 14 | Error model fitting [5.8 s] +✔ | 5 | Time step normalisation ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] -✔ | 1 | Test dataset class mkinds used in gmkin -✔ | 1 | mkinfit features [0.2 s] -✔ | 12 | Special cases of mkinfit calls [0.6 s] +✔ | 5 3 | Nonlinear mixed-effects models [0.1 s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_mixed.R:4:3): Parent fits using saemix are correctly implemented +Reason: !saemix_available is TRUE + +Skip (test_mixed.R:94:3): Print methods work +Reason: !saemix_available is TRUE + +Skip (test_mixed.R:118:3): saem results are reproducible for biphasic fits +Reason: !saemix_available is TRUE +──────────────────────────────────────────────────────────────────────────────── +✔ | 2 | Test dataset classes mkinds and mkindsg +✔ | 1 | mkinfit features [0.3 s] +✔ | 10 | Special cases of mkinfit calls [0.3 s] ✔ | 8 | mkinmod model generation and printing [0.2 s] ✔ | 3 | Model predictions with mkinpredict [0.3 s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.3 s] -✔ | 9 | Nonlinear mixed-effects models [7.3 s] -✔ | 14 | Plotting [1.3 s] +✔ | 14 2 | Evaluations according to 2015 NAFTA guidance [2.2 s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_nafta.R:25:5): Test data from Appendix B are correctly evaluated +Reason: getRversion() >= "4.1.0" is TRUE + +Skip (test_nafta.R:53:5): Test data from Appendix D are correctly evaluated +Reason: getRversion() >= "4.1.0" is TRUE +──────────────────────────────────────────────────────────────────────────────── +✔ | 9 | Nonlinear mixed-effects models [7.9 s] +✔ | 0 1 | Plotting [0.7 s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_plot.R:18:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Reason: getRversion() >= "4.1.0" is TRUE +──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s] -✔ | 4 | Summary +✔ | 4 | Summary [0.1 s] ✔ | 1 | Summaries of old mkinfit objects -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.0 s] -✔ | 9 | Hypothesis tests [7.4 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] +✔ | 9 | Hypothesis tests [7.7 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.0 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 36.9 s +Duration: 41.2 s + +── Skipped tests ────────────────────────────────────────────────────────────── +● !saemix_available is TRUE (3) +● getRversion() >= "4.1.0" is TRUE (3) -OK: 162 -Failed: 0 -Warnings: 0 -Skipped: 0 +[ FAIL 0 | WARN 0 | SKIP 6 | PASS 160 ] |