diff options
Diffstat (limited to 'tests/testthat/setup_script.R')
| -rw-r--r-- | tests/testthat/setup_script.R | 25 |
1 files changed, 10 insertions, 15 deletions
diff --git a/tests/testthat/setup_script.R b/tests/testthat/setup_script.R index 693a2a25..4688b7d7 100644 --- a/tests/testthat/setup_script.R +++ b/tests/testthat/setup_script.R @@ -183,28 +183,25 @@ ds_biphasic <- lapply(ds_biphasic_mean, function(ds) { }) # Mixed model fits -saemix_available <- FALSE -if (requireNamespace("saemix", quietly = TRUE)) { - if(packageVersion("saemix") >= "3.0") saemix_available <- TRUE -} mmkin_sfo_1 <- mmkin("SFO", ds_sfo, quiet = TRUE, error_model = "tc", cores = n_cores) mmkin_dfop_1 <- mmkin("DFOP", ds_dfop, quiet = TRUE, cores = n_cores) mmkin_biphasic <- mmkin(list("DFOP-SFO" = DFOP_SFO), ds_biphasic, quiet = TRUE, cores = n_cores) mmkin_biphasic_mixed <- mixed(mmkin_biphasic) +# nlme dfop_nlme_1 <- nlme(mmkin_dfop_1) nlme_biphasic <- nlme(mmkin_biphasic) -if (saemix_available) { - sfo_saem_1 <- saem(mmkin_sfo_1, quiet = TRUE, transformations = "saemix") +# saemix +sfo_saem_1 <- saem(mmkin_sfo_1, quiet = TRUE, transformations = "saemix") - dfop_saemix_1 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "mkin") - dfop_saemix_2 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "saemix") +dfop_saemix_1 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "mkin") +dfop_saemix_2 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "saemix") - saem_biphasic_m <- saem(mmkin_biphasic, transformations = "mkin", quiet = TRUE) - saem_biphasic_s <- saem(mmkin_biphasic, transformations = "saemix", quiet = TRUE) -} +saem_biphasic_m <- saem(mmkin_biphasic, transformations = "mkin", quiet = TRUE) +saem_biphasic_s <- saem(mmkin_biphasic, transformations = "saemix", quiet = TRUE) +# UBA datasets ds_uba <- lapply(experimental_data_for_UBA_2019[6:10], function(x) subset(x$data[c("name", "time", "value")])) names(ds_uba) <- paste("Dataset", 6:10) @@ -216,7 +213,5 @@ f_uba_mmkin <- mmkin(list("SFO-SFO" = sfo_sfo_uba, "DFOP-SFO" = dfop_sfo_uba), ds_uba, quiet = TRUE, cores = n_cores) f_uba_dfop_sfo_mixed <- mixed(f_uba_mmkin[2, ]) -if (saemix_available) { - f_uba_sfo_sfo_saem <- saem(f_uba_mmkin["SFO-SFO", ], quiet = TRUE, transformations = "saemix") - f_uba_dfop_sfo_saem <- saem(f_uba_mmkin["DFOP-SFO", ], quiet = TRUE, transformations = "saemix") -} +f_uba_sfo_sfo_saem <- saem(f_uba_mmkin["SFO-SFO", ], quiet = TRUE, transformations = "saemix") +f_uba_dfop_sfo_saem <- saem(f_uba_mmkin["DFOP-SFO", ], quiet = TRUE, transformations = "saemix") |