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Diffstat (limited to 'tests/testthat/summary_DFOP_FOCUS_C.txt')
| -rw-r--r-- | tests/testthat/summary_DFOP_FOCUS_C.txt | 125 |
1 files changed, 65 insertions, 60 deletions
diff --git a/tests/testthat/summary_DFOP_FOCUS_C.txt b/tests/testthat/summary_DFOP_FOCUS_C.txt index da3276e1..2b0210c0 100644 --- a/tests/testthat/summary_DFOP_FOCUS_C.txt +++ b/tests/testthat/summary_DFOP_FOCUS_C.txt @@ -1,77 +1,82 @@ -saemix version used for fitting: 3.1.9000 -mkin version used for pre-fitting: 0.9.50.4 -R version used for fitting: 4.0.3 -Date of fit: Wed Dec 9 08:16:28 2020 -Date of summary: Wed Dec 9 08:23:19 2020 +mkin version used for fitting: Dummy 0.0 for testing +R version used for fitting: Dummy R version for testing +Date of fit: Dummy date for testing +Date of summary: Dummy date for testing Equations: d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent -d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g) - * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * - exp(-k2 * time))) * parent - k_m1 * m1 - -Data: -509 observations of 2 variable(s) grouped in 15 datasets Model predictions using solution type analytical -Fitted in 10.222 s using 300, 100 iterations +Fitted using test 0 model solutions performed in test time 0 s + +Error model: Constant variance -Variance model: Constant variance +Error model algorithm: OLS -Mean of starting values for individual parameters: - parent_0 k_m1 f_parent_to_m1 k1 k2 - 1.007005e+02 1.837381e-03 4.803953e-01 4.534096e-02 1.918378e-02 - g - 5.068235e-01 +Starting values for parameters to be optimised: + value type +parent_0 85.10 state +k1 0.10 deparm +k2 0.01 deparm +g 0.50 deparm -Fixed degradation parameter values: +Starting values for the transformed parameters actually optimised: + value lower upper +parent_0 85.100000 -Inf Inf +log_k1 -2.302585 -Inf Inf +log_k2 -4.605170 -Inf Inf +g_qlogis 0.000000 -Inf Inf + +Fixed parameter values: None Results: -Likelihood computed by importance sampling - AIC BIC logLik - 2692 2702 -1333 - -Optimised parameters: - est. lower upper -parent_0 1.002e+02 99.302986 1.011e+02 -k_m1 2.182e-03 0.001576 2.788e-03 -f_parent_to_m1 4.883e-01 0.447687 5.289e-01 -k1 4.014e-02 0.023941 5.634e-02 -k2 1.517e-02 0.008507 2.184e-02 -g 5.007e-01 0.380534 6.208e-01 - -Correlation: - prnt_0 k_m1 f_p__1 k1 k2 -k_m1 -0.152 -f_parent_to_m1 -0.138 0.396 -k1 0.085 -0.036 -0.026 -k2 0.005 0.067 0.018 -0.043 -g -0.075 -0.113 -0.029 -0.248 -0.263 - -Random effects: - est. lower upper -SD.parent_0 1.2293 0.3904 2.0682 -SD.k_m1 0.1383 -0.4780 0.7545 -SD.f_parent_to_m1 0.2843 0.1746 0.3940 -SD.k1 0.7097 0.4220 0.9974 -SD.k2 0.7829 0.4712 1.0946 -SD.g 0.2666 -0.3260 0.8592 - -Variance model: - est. lower upper -a.1 2.749 2.569 2.929 - -Resulting formation fractions: - ff -parent_m1 0.4883 -parent_sink 0.5117 + AIC BIC logLik + 29.02372 30.00984 -9.511861 + +Optimised, transformed parameters with symmetric confidence intervals: + Estimate Std. Error Lower Upper +parent_0 85.0000 0.66620 83.1500 86.8500 +log_k1 -0.7775 0.03380 -0.8713 -0.6836 +log_k2 -4.0260 0.13100 -4.3890 -3.6620 +g_qlogis 1.7660 0.08218 1.5380 1.9940 +sigma 0.6962 0.16410 0.2406 1.1520 + +Parameter correlation: +[1] "Correlation matrix is platform dependent, not tested" + +Backtransformed parameters: +Confidence intervals for internally transformed parameters are asymmetric. +t-test (unrealistically) based on the assumption of normal distribution +for estimators of untransformed parameters. + Estimate t value Pr(>t) Lower Upper +parent_0 85.00000 127.600 1.131e-08 83.15000 86.85000 +k1 0.45960 29.580 3.887e-06 0.41840 0.50480 +k2 0.01785 7.636 7.901e-04 0.01241 0.02568 +g 0.85390 83.310 6.221e-08 0.82310 0.88020 +sigma 0.69620 4.243 6.618e-03 0.24060 1.15200 + +FOCUS Chi2 error levels in percent: + err.min n.optim df +All data 2.661 4 5 +parent 2.661 4 5 Estimated disappearance times: - DT50 DT90 DT50back DT50_k1 DT50_k2 -parent 27.07 110.1 33.14 17.27 45.68 -m1 317.69 1055.4 NA NA NA + DT50 DT90 DT50back DT50_k1 DT50_k2 +parent 1.887 21.25 6.397 1.508 38.83 + +Data: + time variable observed predicted residual + 0 parent 85.1 85.003 0.09726 + 1 parent 57.9 58.039 -0.13912 + 3 parent 29.9 30.054 -0.15351 + 7 parent 14.6 13.866 0.73388 + 14 parent 9.7 9.787 -0.08657 + 28 parent 6.6 7.532 -0.93205 + 63 parent 4.0 4.033 -0.03269 + 91 parent 3.9 2.447 1.45348 + 119 parent 0.6 1.484 -0.88424 |