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-rw-r--r--tests/testthat/summary_DFOP_FOCUS_D_eigen.txt133
1 files changed, 67 insertions, 66 deletions
diff --git a/tests/testthat/summary_DFOP_FOCUS_D_eigen.txt b/tests/testthat/summary_DFOP_FOCUS_D_eigen.txt
index 6ddbc1ab..141f57a1 100644
--- a/tests/testthat/summary_DFOP_FOCUS_D_eigen.txt
+++ b/tests/testthat/summary_DFOP_FOCUS_D_eigen.txt
@@ -4,8 +4,8 @@ Date of fit: Dummy date for testing
Date of summary: Dummy date for testing
Equations:
-d_parent/dt = - k_parent * parent
-d_m1/dt = + f_parent_to_m1 * k_parent * parent - k_m1 * m1
+d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
+d_m1/dt = + k_parent_m1 * parent - k_m1_sink * m1
Model predictions using solution type eigen
@@ -16,18 +16,18 @@ Error model: Constant variance
Error model algorithm: OLS
Starting values for parameters to be optimised:
- value type
-parent_0 100.7500 state
-k_parent 0.1000 deparm
-k_m1 0.1001 deparm
-f_parent_to_m1 0.5000 deparm
+ value type
+parent_0 100.7500 state
+k_parent_sink 0.1000 deparm
+k_parent_m1 0.1001 deparm
+k_m1_sink 0.1002 deparm
Starting values for the transformed parameters actually optimised:
- value lower upper
-parent_0 100.750000 -Inf Inf
-log_k_parent -2.302585 -Inf Inf
-log_k_m1 -2.301586 -Inf Inf
-f_parent_ilr_1 0.000000 -Inf Inf
+ value lower upper
+parent_0 100.750000 -Inf Inf
+log_k_parent_sink -2.302585 -Inf Inf
+log_k_parent_m1 -2.301586 -Inf Inf
+log_k_m1_sink -2.300587 -Inf Inf
Fixed parameter values:
value type
@@ -39,37 +39,38 @@ Results:
204.4486 212.6365 -97.22429
Optimised, transformed parameters with symmetric confidence intervals:
- Estimate Std. Error Lower Upper
-parent_0 99.60000 1.57000 96.40000 102.8000
-log_k_parent -2.31600 0.04087 -2.39900 -2.2330
-log_k_m1 -5.24800 0.13320 -5.51800 -4.9770
-f_parent_ilr_1 0.04096 0.06312 -0.08746 0.1694
-sigma 3.12600 0.35850 2.39600 3.8550
+ Estimate Std. Error Lower Upper
+parent_0 99.600 1.57000 96.400 102.800
+log_k_parent_sink -3.038 0.07626 -3.193 -2.883
+log_k_parent_m1 -2.980 0.04033 -3.062 -2.898
+log_k_m1_sink -5.248 0.13320 -5.518 -4.977
+sigma 3.126 0.35850 2.396 3.855
Parameter correlation:
-NULL
+[1] "Correlation matrix is platform dependent, not tested"
Backtransformed parameters:
Confidence intervals for internally transformed parameters are asymmetric.
t-test (unrealistically) based on the assumption of normal distribution
for estimators of untransformed parameters.
- Estimate t value Pr(>t) Lower Upper
-parent_0 99.600000 63.430 2.298e-36 96.400000 1.028e+02
-k_parent 0.098700 24.470 4.955e-23 0.090820 1.073e-01
-k_m1 0.005261 7.510 6.165e-09 0.004012 6.898e-03
-f_parent_to_m1 0.514500 23.070 3.104e-22 0.469100 5.596e-01
-sigma 3.126000 8.718 2.235e-10 2.396000 3.855e+00
+ Estimate t value Pr(>t) Lower Upper
+parent_0 99.600000 63.430 2.298e-36 96.400000 1.028e+02
+k_parent_sink 0.047920 13.110 6.126e-15 0.041030 5.596e-02
+k_parent_m1 0.050780 24.800 3.269e-23 0.046780 5.512e-02
+k_m1_sink 0.005261 7.510 6.165e-09 0.004012 6.898e-03
+sigma 3.126000 8.718 2.235e-10 2.396000 3.855e+00
FOCUS Chi2 error levels in percent:
err.min n.optim df
All data 6.398 4 15
-parent 6.459 2 7
-m1 4.690 2 8
+parent 6.827 3 6
+m1 4.490 1 9
Resulting formation fractions:
ff
-parent_m1 0.5145
parent_sink 0.4855
+parent_m1 0.5145
+m1_sink 1.0000
Estimated disappearance times:
DT50 DT90
@@ -78,41 +79,41 @@ m1 131.761 437.70
Data:
time variable observed predicted residual
- 0 parent 99.46 99.59848 -1.385e-01
- 0 parent 102.04 99.59848 2.442e+00
- 1 parent 93.50 90.23787 3.262e+00
- 1 parent 92.50 90.23787 2.262e+00
- 3 parent 63.23 74.07320 -1.084e+01
- 3 parent 68.99 74.07320 -5.083e+00
- 7 parent 52.32 49.91207 2.408e+00
- 7 parent 55.13 49.91207 5.218e+00
- 14 parent 27.27 25.01257 2.257e+00
- 14 parent 26.64 25.01257 1.627e+00
- 21 parent 11.50 12.53462 -1.035e+00
- 21 parent 11.64 12.53462 -8.946e-01
- 35 parent 2.85 3.14787 -2.979e-01
- 35 parent 2.91 3.14787 -2.379e-01
- 50 parent 0.69 0.71624 -2.624e-02
- 50 parent 0.63 0.71624 -8.624e-02
- 75 parent 0.05 0.06074 -1.074e-02
- 75 parent 0.06 0.06074 -7.382e-04
- 1 m1 4.84 4.80296 3.704e-02
- 1 m1 5.64 4.80296 8.370e-01
- 3 m1 12.91 13.02400 -1.140e-01
- 3 m1 12.96 13.02400 -6.400e-02
- 7 m1 22.97 25.04476 -2.075e+00
- 7 m1 24.47 25.04476 -5.748e-01
- 14 m1 41.69 36.69002 5.000e+00
- 14 m1 33.21 36.69002 -3.480e+00
- 21 m1 44.37 41.65310 2.717e+00
- 21 m1 46.44 41.65310 4.787e+00
- 35 m1 41.22 43.31312 -2.093e+00
- 35 m1 37.95 43.31312 -5.363e+00
- 50 m1 41.19 41.21831 -2.831e-02
- 50 m1 40.01 41.21831 -1.208e+00
- 75 m1 40.09 36.44703 3.643e+00
- 75 m1 33.85 36.44703 -2.597e+00
- 100 m1 31.04 31.98163 -9.416e-01
- 100 m1 33.13 31.98163 1.148e+00
- 120 m1 25.15 28.78984 -3.640e+00
- 120 m1 33.31 28.78984 4.520e+00
+ 0 parent 99.46 99.59848 not tested
+ 0 parent 102.04 99.59848 not tested
+ 1 parent 93.50 90.23787 not tested
+ 1 parent 92.50 90.23787 not tested
+ 3 parent 63.23 74.07320 not tested
+ 3 parent 68.99 74.07320 not tested
+ 7 parent 52.32 49.91207 not tested
+ 7 parent 55.13 49.91207 not tested
+ 14 parent 27.27 25.01257 not tested
+ 14 parent 26.64 25.01257 not tested
+ 21 parent 11.50 12.53462 not tested
+ 21 parent 11.64 12.53462 not tested
+ 35 parent 2.85 3.14787 not tested
+ 35 parent 2.91 3.14787 not tested
+ 50 parent 0.69 0.71624 not tested
+ 50 parent 0.63 0.71624 not tested
+ 75 parent 0.05 0.06074 not tested
+ 75 parent 0.06 0.06074 not tested
+ 1 m1 4.84 4.80296 not tested
+ 1 m1 5.64 4.80296 not tested
+ 3 m1 12.91 13.02400 not tested
+ 3 m1 12.96 13.02400 not tested
+ 7 m1 22.97 25.04476 not tested
+ 7 m1 24.47 25.04476 not tested
+ 14 m1 41.69 36.69002 not tested
+ 14 m1 33.21 36.69002 not tested
+ 21 m1 44.37 41.65310 not tested
+ 21 m1 46.44 41.65310 not tested
+ 35 m1 41.22 43.31312 not tested
+ 35 m1 37.95 43.31312 not tested
+ 50 m1 41.19 41.21831 not tested
+ 50 m1 40.01 41.21831 not tested
+ 75 m1 40.09 36.44703 not tested
+ 75 m1 33.85 36.44703 not tested
+ 100 m1 31.04 31.98163 not tested
+ 100 m1 33.13 31.98163 not tested
+ 120 m1 25.15 28.78984 not tested
+ 120 m1 33.31 28.78984 not tested

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