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Diffstat (limited to 'tests/testthat/test_mhmkin.R')
| -rw-r--r-- | tests/testthat/test_mhmkin.R | 48 | 
1 files changed, 48 insertions, 0 deletions
| diff --git a/tests/testthat/test_mhmkin.R b/tests/testthat/test_mhmkin.R new file mode 100644 index 00000000..fc588473 --- /dev/null +++ b/tests/testthat/test_mhmkin.R @@ -0,0 +1,48 @@ +context("Batch fitting and diagnosing hierarchical kinetic models") + +test_that("Multiple hierarchical kinetic models can be fitted and diagnosed", { + +  skip_on_cran() +  fits_synth_const <- suppressWarnings( +    mmkin(c("SFO", "FOMC"), ds_sfo[1:6], cores = n_cores, quiet = TRUE)) + +  fits_synth_tc <- suppressWarnings( +    update(fits_synth_const, error_model = "tc")) + +  hfits <- mhmkin(list(fits_synth_const, fits_synth_tc)) + +  expect_known_output( +    print(hfits), +    "print_hfits_synth.txt") + +  expect_known_output( +    print(illparms(hfits)), +    "illparms_hfits_synth.txt") + +  expect_equal(which.min(AIC(hfits)), 3) +  expect_equal(which.min(BIC(hfits)), 3) + +  hfit_sfo_tc <- update(hfits[["SFO", "tc"]], +    covariance.model = diag(c(0, 1))) +  expect_equal(illparms(hfit_sfo_tc), character(0)) + +  test_summary <- summary(hfit_sfo_tc) +  test_summary$saemixversion <- "Dummy 0.0 for testing" +  test_summary$mkinversion <- "Dummy 0.0 for testing" +  test_summary$Rversion <- "Dummy R version for testing" +  test_summary$date.fit <- "Dummy date for testing" +  test_summary$date.summary <- "Dummy date for testing" +  test_summary$time <- c(elapsed = "test time 0") + +  expect_known_output(print(test_summary, digits = 1), +    "summary_hfit_sfo_tc.txt") + +  # It depends on the platform exactly which of the  +  # SFO datasets fail to converge with FOMC +  skip_on_travis() + +  expect_known_output( +    print(fits_synth_const), +    "print_fits_synth_const.txt") + +}) | 
