diff options
Diffstat (limited to 'tests/testthat/test_mixed.R')
| -rw-r--r-- | tests/testthat/test_mixed.R | 13 |
1 files changed, 9 insertions, 4 deletions
diff --git a/tests/testthat/test_mixed.R b/tests/testthat/test_mixed.R index 1e96c338..e9af10e6 100644 --- a/tests/testthat/test_mixed.R +++ b/tests/testthat/test_mixed.R @@ -1,6 +1,8 @@ context("Nonlinear mixed-effects models") -test_that("Parent only models can be fitted using nonlinear mixed effects models", { +test_that("Parent fits using saemix are correctly implemented", { + skip_if(!saemix_available) + expect_error(saem(fits), "Only row objects") # Some fits were done in the setup script mmkin_sfo_2 <- update(mmkin_sfo_1, fixed_initials = c(parent = 100)) @@ -26,7 +28,7 @@ test_that("Parent only models can be fitted using nonlinear mixed effects models expect_equal(round(s_sfo_s1$confint_back["k_parent", "est."], 3), round(s_sfo_n$confint_back["k_parent", "est."], 3)) - mmkin_fomc_1 <- mmkin("FOMC", ds_fomc, quiet = TRUE, error_model = "tc") + mmkin_fomc_1 <- mmkin("FOMC", ds_fomc, quiet = TRUE, error_model = "tc", cores = n_cores) fomc_saem_1 <- saem(mmkin_fomc_1, quiet = TRUE) ci_fomc_s1 <- summary(fomc_saem_1)$confint_back @@ -66,7 +68,7 @@ test_that("Parent only models can be fitted using nonlinear mixed effects models rel_diff_2 <- (s_dfop_s2$confint_back[, "est."] - dfop_pop) / dfop_pop expect_true(all(rel_diff_2 < 0.12)) - mmkin_hs_1 <- mmkin("HS", ds_hs, quiet = TRUE, error_model = "const") + mmkin_hs_1 <- mmkin("HS", ds_hs, quiet = TRUE, error_model = "const", cores = n_cores) hs_saem_1 <- saem(mmkin_hs_1, quiet = TRUE) ci_hs_s1 <- summary(hs_saem_1)$confint_back @@ -88,10 +90,12 @@ test_that("Print methods work", { expect_known_output(print(fits, digits = 2), "print_mmkin_parent.txt") expect_known_output(print(mmkin_biphasic_mixed, digits = 2), "print_mmkin_biphasic_mixed.txt") expect_known_output(print(nlme_biphasic, digits = 1), "print_nlme_biphasic.txt") + + skip_if(!saemix_available) expect_known_output(print(sfo_saem_1, digits = 1), "print_sfo_saem_1.txt") }) -test_that("nlme results are reproducible", { +test_that("nlme results are reproducible to some degree", { test_summary <- summary(nlme_biphasic) test_summary$nlmeversion <- "Dummy 0.0 for testing" @@ -111,6 +115,7 @@ test_that("nlme results are reproducible", { test_that("saem results are reproducible for biphasic fits", { + skip_if(!saemix_available) test_summary <- summary(saem_biphasic_s) test_summary$saemixversion <- "Dummy 0.0 for testing" test_summary$mkinversion <- "Dummy 0.0 for testing" |