diff options
Diffstat (limited to 'tests/testthat/test_plots_summary_twa.R')
| -rw-r--r-- | tests/testthat/test_plots_summary_twa.R | 27 |
1 files changed, 19 insertions, 8 deletions
diff --git a/tests/testthat/test_plots_summary_twa.R b/tests/testthat/test_plots_summary_twa.R index 43036f1a..1dcf49ac 100644 --- a/tests/testthat/test_plots_summary_twa.R +++ b/tests/testthat/test_plots_summary_twa.R @@ -16,11 +16,6 @@ # You should have received a copy of the GNU General Public License along with # this program. If not, see <http://www.gnu.org/licenses/> -models <- c("SFO", "FOMC", "DFOP", "HS") -fits <- mmkin(models, - list(FOCUS_C = FOCUS_2006_C, FOCUS_D = FOCUS_2006_D), - quiet = TRUE, cores = 1) - context("Calculation of maximum time weighted average concentrations (TWAs)") test_that("Time weighted average concentrations are correct", { @@ -49,7 +44,7 @@ test_that("Time weighted average concentrations are correct", { context("Summary") -test_that("The summary is reproducible", { +test_that("Summaries are reproducible", { fit <- fits[["DFOP", "FOCUS_C"]] test_summary <- summary(fit) test_summary$fit_version <- "Dummy 0.0 for testing" @@ -63,6 +58,19 @@ test_that("The summary is reproducible", { # and between Travis and my own Linux system test_summary$Corr <- signif(test_summary$Corr, 1) expect_known_output(print(test_summary), "summary_DFOP_FOCUS_C.txt") + + test_summary_2 <- summary(f_sfo_sfo,) + test_summary_2$fit_version <- "Dummy 0.0 for testing" + test_summary_2$fit_Rversion <- "Dummy R version for testing" + test_summary_2$date.fit <- "Dummy date for testing" + test_summary_2$date.summary <- "Dummy date for testing" + test_summary_2$calls <- "test 0" + test_summary_2$time <- c(elapsed = "test time 0") + # The correlation matrix is quite platform dependent + # It differs between i386 and amd64 on Windows + # and between Travis and my own Linux system + test_summary_2$Corr <- signif(test_summary_2$Corr, 1) + expect_known_output(print(test_summary_2), "summary_DFOP_FOCUS_D.txt") }) context("Plotting") @@ -71,11 +79,13 @@ test_that("Plotting mmkin objects is reproducible", { skip_on_cran() plot_sep_FOCUS_C_SFO <- function() plot_sep(fits[["SFO", "FOCUS_C"]]) mkinparplot_FOCUS_C_SFO <- function() mkinparplot(fits[["SFO", "FOCUS_C"]]) + mkinerrplot_FOCUS_C_SFO <- function() mkinerrplot(fits[["SFO", "FOCUS_C"]]) mmkin_FOCUS_C <- function() plot(fits[, "FOCUS_C"]) mmkin_SFO <- function() plot(fits["SFO",]) vdiffr::expect_doppelganger("mkinfit plot for FOCUS C with sep = TRUE", plot_sep_FOCUS_C_SFO) vdiffr::expect_doppelganger("mkinparplot for FOCUS C SFO", mkinparplot_FOCUS_C_SFO) + vdiffr::expect_doppelganger("mkinerrplot for FOCUS C SFO", mkinerrplot_FOCUS_C_SFO) vdiffr::expect_doppelganger("mmkin plot for FOCUS C", mmkin_FOCUS_C) vdiffr::expect_doppelganger("mmkin plot for SFO (FOCUS C and D)", mmkin_SFO) }) @@ -84,7 +94,8 @@ context("AIC calculation") test_that("The AIC is reproducible", { expect_equivalent(AIC(fits[["SFO", "FOCUS_C"]]), 59.3, scale = 1, tolerance = 0.1) - expect_equivalent(AIC(fits[, "FOCUS_C"]), - data.frame(df = c(3, 4, 5, 5), AIC = c(59.3, 44.7, 29.0, 39.2)), + expect_equivalent(AIC(fits[, "FOCUS_C"]), + data.frame(df = c(3, 4, 5, 5), AIC = c(59.3, 44.7, 29.0, 39.2)), scale = 1, tolerance = 0.1) + expect_error(AIC(fits["SFO", ]), "column object") }) |