diff options
Diffstat (limited to 'tests/testthat')
| -rw-r--r-- | tests/testthat/FOCUS_2006_D.csf | 7 | ||||
| -rw-r--r-- | tests/testthat/FOCUS_2006_D.rds | bin | 0 -> 591 bytes | |||
| -rw-r--r-- | tests/testthat/FOCUS_2006_D.txt | 0 | ||||
| -rw-r--r-- | tests/testthat/test_CAKE_export.R | 4 | ||||
| -rw-r--r-- | tests/testthat/test_FOCUS_D_UBA_expertise.R | 3 | ||||
| -rw-r--r-- | tests/testthat/test_plots_summary_twa.R | 9 |
6 files changed, 17 insertions, 6 deletions
diff --git a/tests/testthat/FOCUS_2006_D.csf b/tests/testthat/FOCUS_2006_D.csf index 22c5f2b4..ae524e01 100644 --- a/tests/testthat/FOCUS_2006_D.csf +++ b/tests/testthat/FOCUS_2006_D.csf @@ -5,7 +5,7 @@ Description: MeasurementUnits: % AR TimeUnits: days Comments: Created using mkin::CAKE_export -Date: 2019-02-26 +Date: 2019-02-27 Optimiser: IRLS [Data] @@ -47,6 +47,11 @@ Time Parent M1 120 33.31 +[Model] +ParentCompartment: Parent parent parent +Compartment: M1 m1 m1 +Link: Parent M1 0.5 0 1 Free Explicit + [ComponentNames] Parent:parent M1:m1 diff --git a/tests/testthat/FOCUS_2006_D.rds b/tests/testthat/FOCUS_2006_D.rds Binary files differnew file mode 100644 index 00000000..ff3b4f0f --- /dev/null +++ b/tests/testthat/FOCUS_2006_D.rds diff --git a/tests/testthat/FOCUS_2006_D.txt b/tests/testthat/FOCUS_2006_D.txt deleted file mode 100644 index e69de29b..00000000 --- a/tests/testthat/FOCUS_2006_D.txt +++ /dev/null diff --git a/tests/testthat/test_CAKE_export.R b/tests/testthat/test_CAKE_export.R index 5f984782..23b424fc 100644 --- a/tests/testthat/test_CAKE_export.R +++ b/tests/testthat/test_CAKE_export.R @@ -22,8 +22,10 @@ test_that("Exporting is reproducible", { CAKE_export(list("FOCUS C" = FOCUS_2006_C, "FOCUS D" = FOCUS_2006_D), map = c(parent = "Parent", m1 = "M1"), + links = c(parent = "m1"), filename = "FOCUS_2006_D.csf", overwrite = TRUE, study = "FOCUS 2006 D") csf <- readLines(con = "FOCUS_2006_D.csf") - expect_known_output(csf, "FOCUS_2006_D.txt") + csf[8] <- "Date: Dummy date 0000-00-00" + expect_known_value(csf, file = "FOCUS_2006_D.rds") }) diff --git a/tests/testthat/test_FOCUS_D_UBA_expertise.R b/tests/testthat/test_FOCUS_D_UBA_expertise.R index ff2c6f5f..42c4fcfb 100644 --- a/tests/testthat/test_FOCUS_D_UBA_expertise.R +++ b/tests/testthat/test_FOCUS_D_UBA_expertise.R @@ -51,9 +51,6 @@ test_that("Fits with formation fractions are correct for FOCUS D", { c(7.02, 23.33)) expect_equal(round(as.numeric(endpoints(fit.ff)$distimes["m1", ]), 1), c(131.8, 437.7)) - # The following value is not from the UBA expertise, only used here - # to check stability of the AIC calculation - expect_equivalent(AIC(fit.ff), 212.6, scale = 1, tolerance = 0.1) }) test_that("Fits without internal transformations are correct for FOCUS D", { diff --git a/tests/testthat/test_plots_summary_twa.R b/tests/testthat/test_plots_summary_twa.R index 5201567d..e13111bb 100644 --- a/tests/testthat/test_plots_summary_twa.R +++ b/tests/testthat/test_plots_summary_twa.R @@ -51,7 +51,6 @@ test_that("Time weighted average concentrations are correct", { context("Summary") test_that("The summary is reproducible", { - skip_on_cran() fit <- fits[["DFOP", "FOCUS_C"]] test_summary <- summary(fit) test_summary$fit_version <- "Dummy 0.0 for testing" @@ -78,3 +77,11 @@ test_that("Plotting mmkin objects is reproducible", { vdiffr::expect_doppelganger("mmkin plot for SFO (FOCUS C and D)", mmkin_SFO) }) +context("AIC calculation") + +test_that("The AIC is reproducible", { + expect_equivalent(AIC(fits[["SFO", "FOCUS_C"]]), 59.8, scale = 1, tolerance = 0.1) + expect_equivalent(AIC(fits[, "FOCUS_C"]), + data.frame(df = c(3, 4, 5, 5), AIC = c(59.8, 44.7, 29.1, 39.3)), + scale = 1, tolerance = 0.1) +}) |