diff options
Diffstat (limited to 'tests/testthat')
| -rw-r--r-- | tests/testthat/_snaps/multistart/llhist-for-sfo-fit.svg | 48 | ||||
| -rw-r--r-- | tests/testthat/_snaps/multistart/parhist-for-sfo-fit.svg | 106 | ||||
| -rw-r--r-- | tests/testthat/setup_script.R | 1 | ||||
| -rw-r--r-- | tests/testthat/test_multistart.R | 8 | ||||
| -rw-r--r-- | tests/testthat/test_saemix_parent.R | 3 |
5 files changed, 134 insertions, 32 deletions
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font-family: sans;' textLength='62.03px' lengthAdjust='spacingAndGlyphs'>Original run</text> +<text x='126.22' y='470.11' style='font-size: 12.00px; font-family: sans;' textLength='75.36px' lengthAdjust='spacingAndGlyphs'>Multistart runs</text> +</g> +</svg> diff --git a/tests/testthat/setup_script.R b/tests/testthat/setup_script.R index 4de2674f..777c998a 100644 --- a/tests/testthat/setup_script.R +++ b/tests/testthat/setup_script.R @@ -183,6 +183,7 @@ nlme_biphasic <- suppressWarnings(nlme(mmkin_biphasic)) # saemix sfo_saem_1 <- saem(mmkin_sfo_1, quiet = TRUE, transformations = "saemix") +sfo_saem_1_reduced <- update(sfo_saem_1, no_random_effect = "parent_0") dfop_saemix_1 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "mkin", no_random_effect = "parent_0") diff --git a/tests/testthat/test_multistart.R b/tests/testthat/test_multistart.R index 60fdefdc..e5b44e78 100644 --- a/tests/testthat/test_multistart.R +++ b/tests/testthat/test_multistart.R @@ -1,10 +1,14 @@ context("Multistart method for saem.mmkin models") test_that("multistart works for saem.mmkin models", { - saem_sfo_s_multi <- multistart(sfo_saem_1, n = 8, cores = n_cores) + set.seed(123456) + saem_sfo_s_multi <- multistart(sfo_saem_1_reduced, n = 8, cores = n_cores, + no_random_effect = "parent_0") - llhist_sfo <- function() llhist(saem_sfo_s_multi, xlim = c(-644, -647)) + llhist_sfo <- function() llhist(saem_sfo_s_multi) + parhist_sfo <- function() parhist(saem_sfo_s_multi, ylim = c(0.5, 2)) vdiffr::expect_doppelganger("llhist for sfo fit", llhist_sfo) + vdiffr::expect_doppelganger("parhist for sfo fit", parhist_sfo) set.seed(123456) saem_biphasic_m_multi <- multistart(saem_biphasic_m, n = 8, diff --git a/tests/testthat/test_saemix_parent.R b/tests/testthat/test_saemix_parent.R index d8b6b19e..193dcdcd 100644 --- a/tests/testthat/test_saemix_parent.R +++ b/tests/testthat/test_saemix_parent.R @@ -10,8 +10,7 @@ test_that("Parent fits using saemix are correctly implemented", { # We did not introduce variance of parent_0 in the data generation # This is correctly detected expect_equal(illparms(sfo_saem_1), "sd(parent_0)") - # So we remove this variance - sfo_saem_1_reduced <- update(sfo_saem_1, no_random_effect = "parent_0") + # So we have also done a fit without this variance expect_equal(illparms(sfo_saem_1_reduced), character(0)) # We cannot currently do the fit with completely fixed initial values |
