diff options
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/testthat/illparms_hfits_synth_no_ranef_auto.txt | 4 | ||||
| -rw-r--r-- | tests/testthat/print_hfits_synth_no_ranef_auto.txt | 9 | ||||
| -rw-r--r-- | tests/testthat/summary_hfit_sfo_tc.txt | 11 | ||||
| -rw-r--r-- | tests/testthat/summary_saem_dfop_sfo_s.txt | 15 | ||||
| -rw-r--r-- | tests/testthat/test_mhmkin.R | 10 |
5 files changed, 24 insertions, 25 deletions
diff --git a/tests/testthat/illparms_hfits_synth_no_ranef_auto.txt b/tests/testthat/illparms_hfits_synth_no_ranef_auto.txt deleted file mode 100644 index a64ed222..00000000 --- a/tests/testthat/illparms_hfits_synth_no_ranef_auto.txt +++ /dev/null @@ -1,4 +0,0 @@ - error -degradation const tc - SFO sd(parent_0) - FOMC b.1 diff --git a/tests/testthat/print_hfits_synth_no_ranef_auto.txt b/tests/testthat/print_hfits_synth_no_ranef_auto.txt deleted file mode 100644 index 9af1cbcd..00000000 --- a/tests/testthat/print_hfits_synth_no_ranef_auto.txt +++ /dev/null @@ -1,9 +0,0 @@ -<mhmkin> object -Status of individual fits: - - error -degradation const tc - SFO OK OK - FOMC OK OK - -OK: Fit terminated successfully diff --git a/tests/testthat/summary_hfit_sfo_tc.txt b/tests/testthat/summary_hfit_sfo_tc.txt index bb5bf6fb..0a61f75f 100644 --- a/tests/testthat/summary_hfit_sfo_tc.txt +++ b/tests/testthat/summary_hfit_sfo_tc.txt @@ -17,13 +17,22 @@ Using 300, 100 iterations and 9 chains Variance model: Two-component variance function -Mean of starting values for individual parameters: +Starting values for degradation parameters: parent_0 log_k_parent 101 -3 Fixed degradation parameter values: None +Starting values for random effects (square root of initial entries in omega): + parent_0 log_k_parent +parent_0 4 0.0 +log_k_parent 0 0.4 + +Starting values for error model parameters: +a.1 b.1 + 1 1 + Results: Likelihood computed by importance sampling diff --git a/tests/testthat/summary_saem_dfop_sfo_s.txt b/tests/testthat/summary_saem_dfop_sfo_s.txt index 7c337843..6468ff17 100644 --- a/tests/testthat/summary_saem_dfop_sfo_s.txt +++ b/tests/testthat/summary_saem_dfop_sfo_s.txt @@ -22,7 +22,7 @@ Using 300, 100 iterations and 4 chains Variance model: Two-component variance function -Mean of starting values for individual parameters: +Starting values for degradation parameters: parent_0 k_m1 f_parent_to_m1 k1 k2 1e+02 7e-03 5e-01 1e-01 2e-02 g @@ -31,6 +31,19 @@ Mean of starting values for individual parameters: Fixed degradation parameter values: None +Starting values for random effects (square root of initial entries in omega): + parent_0 k_m1 f_parent_to_m1 k1 k2 g +parent_0 101 0 0 0 0 0 +k_m1 0 1 0 0 0 0 +f_parent_to_m1 0 0 1 0 0 0 +k1 0 0 0 1 0 0 +k2 0 0 0 0 1 0 +g 0 0 0 0 0 1 + +Starting values for error model parameters: +a.1 b.1 + 1 1 + Results: Likelihood computed by importance sampling diff --git a/tests/testthat/test_mhmkin.R b/tests/testthat/test_mhmkin.R index 93333ac1..e2339f28 100644 --- a/tests/testthat/test_mhmkin.R +++ b/tests/testthat/test_mhmkin.R @@ -46,14 +46,4 @@ test_that("Multiple hierarchical kinetic models can be fitted and diagnosed", { print(fits_synth_const), "print_fits_synth_const.txt") - hfits_no_ranef_auto <- update(hfits, no_random_effect = "auto", auto_ranef_threshold = 2) - - expect_known_output( - print(hfits_no_ranef_auto), - "print_hfits_synth_no_ranef_auto.txt") - - expect_known_output( - print(illparms(hfits_no_ranef_auto)), - "illparms_hfits_synth_no_ranef_auto.txt") - }) |