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Diffstat (limited to 'vignettes/web_only/benchmarks.html')
| -rw-r--r-- | vignettes/web_only/benchmarks.html | 92 |
1 files changed, 27 insertions, 65 deletions
diff --git a/vignettes/web_only/benchmarks.html b/vignettes/web_only/benchmarks.html index fb799462..6cce41e6 100644 --- a/vignettes/web_only/benchmarks.html +++ b/vignettes/web_only/benchmarks.html @@ -1592,7 +1592,7 @@ div.tocify { <h1 class="title toc-ignore">Benchmark timings for mkin</h1> <h4 class="author">Johannes Ranke</h4> -<h4 class="date">Last change 14 July 2022 (rebuilt 2023-02-13)</h4> +<h4 class="date">Last change 14 July 2022 (rebuilt 2023-02-17)</h4> </div> @@ -1636,31 +1636,11 @@ FOMC_SFO <- mkinmod( DFOP_SFO <- mkinmod( parent = mkinsub("FOMC", "m1"), # erroneously used FOMC twice, not fixed for consistency m1 = mkinsub("SFO")) -t3 <- system.time(mmkin_bench(list(SFO_SFO, FOMC_SFO, DFOP_SFO), list(FOCUS_D)))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> -<pre class="r"><code>t4 <- system.time(mmkin_bench(list(SFO_SFO, FOMC_SFO, DFOP_SFO), list(FOCUS_D), - error_model = "tc"))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> -<pre class="r"><code>t5 <- system.time(mmkin_bench(list(SFO_SFO, FOMC_SFO, DFOP_SFO), list(FOCUS_D), +t3 <- system.time(mmkin_bench(list(SFO_SFO, FOMC_SFO, DFOP_SFO), list(FOCUS_D)))[["elapsed"]] +t4 <- system.time(mmkin_bench(list(SFO_SFO, FOMC_SFO, DFOP_SFO), list(FOCUS_D), + error_model = "tc"))[["elapsed"]] +t5 <- system.time(mmkin_bench(list(SFO_SFO, FOMC_SFO, DFOP_SFO), list(FOCUS_D), error_model = "obs"))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> <p>Two metabolites, synthetic data:</p> <pre class="r"><code>m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"), M1 = mkinsub("SFO", "M2"), @@ -1676,36 +1656,18 @@ SFO_lin_a <- synthetic_data_for_UBA_2014[[1]]$data DFOP_par_c <- synthetic_data_for_UBA_2014[[12]]$data -t6 <- system.time(mmkin_bench(list(m_synth_SFO_lin), list(SFO_lin_a)))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> -<pre class="r"><code>t7 <- system.time(mmkin_bench(list(m_synth_DFOP_par), list(DFOP_par_c)))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> -<pre class="r"><code>t8 <- system.time(mmkin_bench(list(m_synth_SFO_lin), list(SFO_lin_a), - error_model = "tc"))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> -<pre class="r"><code>t9 <- system.time(mmkin_bench(list(m_synth_DFOP_par), list(DFOP_par_c), - error_model = "tc"))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> -<pre class="r"><code>t10 <- system.time(mmkin_bench(list(m_synth_SFO_lin), list(SFO_lin_a), - error_model = "obs"))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> -<pre class="r"><code>t11 <- system.time(mmkin_bench(list(m_synth_DFOP_par), list(DFOP_par_c), +t6 <- system.time(mmkin_bench(list(m_synth_SFO_lin), list(SFO_lin_a)))[["elapsed"]] +t7 <- system.time(mmkin_bench(list(m_synth_DFOP_par), list(DFOP_par_c)))[["elapsed"]] + +t8 <- system.time(mmkin_bench(list(m_synth_SFO_lin), list(SFO_lin_a), + error_model = "tc"))[["elapsed"]] +t9 <- system.time(mmkin_bench(list(m_synth_DFOP_par), list(DFOP_par_c), + error_model = "tc"))[["elapsed"]] + +t10 <- system.time(mmkin_bench(list(m_synth_SFO_lin), list(SFO_lin_a), + error_model = "obs"))[["elapsed"]] +t11 <- system.time(mmkin_bench(list(m_synth_DFOP_par), list(DFOP_par_c), error_model = "obs"))[["elapsed"]]</code></pre> -<pre><code>## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable -## Error in mkinmod[["symbols"]] : -## object of type 'closure' is not subsettable</code></pre> </div> <div id="results" class="section level2"> <h2>Results</h2> @@ -1901,8 +1863,8 @@ models fitted to two datasets, i.e. eight fits for each test.</p> <td align="left">Ryzen 9 7950X 16-Core Processor</td> <td align="left">4.2.2</td> <td align="left">1.3.0</td> -<td align="right">1.271</td> -<td align="right">1.787</td> +<td align="right">1.287</td> +<td align="right">1.805</td> </tr> </tbody> </table> @@ -2119,9 +2081,9 @@ for each test.</p> <td align="left">Ryzen 9 7950X 16-Core Processor</td> <td align="left">4.2.2</td> <td align="left">1.3.0</td> -<td align="right">0.526</td> -<td align="right">0.623</td> -<td align="right">0.631</td> +<td align="right">0.731</td> +<td align="right">1.984</td> +<td align="right">1.100</td> </tr> </tbody> </table> @@ -2404,12 +2366,12 @@ dataset, i.e. one fit for each test.</p> <td align="left">Ryzen 9 7950X 16-Core Processor</td> <td align="left">4.2.2</td> <td align="left">1.3.0</td> -<td align="right">0.242</td> -<td align="right">0.237</td> -<td align="right">0.238</td> -<td align="right">0.239</td> -<td align="right">0.237</td> -<td align="right">0.237</td> +<td align="right">0.400</td> +<td align="right">0.518</td> +<td align="right">0.580</td> +<td align="right">0.990</td> +<td align="right">0.701</td> +<td align="right">0.935</td> </tr> </tbody> </table> |