diff options
Diffstat (limited to 'vignettes/web_only/multistart.rmd')
| -rw-r--r-- | vignettes/web_only/multistart.rmd | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/vignettes/web_only/multistart.rmd b/vignettes/web_only/multistart.rmd index 94f4ef98..27a8a96a 100644 --- a/vignettes/web_only/multistart.rmd +++ b/vignettes/web_only/multistart.rmd @@ -40,7 +40,7 @@ with different starting values. ```{r} f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16) -parhist(f_saem_full_multi) +parplot(f_saem_full_multi) ``` This confirms that the variance of k2 is the most problematic parameter, so we @@ -51,7 +51,7 @@ for k2. f_saem_reduced <- update(f_saem_full, no_random_effect = "log_k2") illparms(f_saem_reduced) f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cores = 16) -parhist(f_saem_reduced_multi, lpos = "topright") +parplot(f_saem_reduced_multi, lpos = "topright") ``` The results confirm that all remaining parameters can be determined with sufficient @@ -67,7 +67,7 @@ The parameter histograms can be further improved by excluding the result with the low likelihood. ```{r} -parhist(f_saem_reduced_multi, lpos = "topright", llmin = -326, ylim = c(0.5, 2)) +parplot(f_saem_reduced_multi, lpos = "topright", llmin = -326, ylim = c(0.5, 2)) ``` We can use the `anova` method to compare the models, including a likelihood ratio |