diff options
Diffstat (limited to 'vignettes')
| -rw-r--r-- | vignettes/FOCUS_D.Rmd | 2 | ||||
| -rw-r--r-- | vignettes/compiled_models.Rmd | 12 |
2 files changed, 6 insertions, 8 deletions
diff --git a/vignettes/FOCUS_D.Rmd b/vignettes/FOCUS_D.Rmd index 902d3d24..8ae73c16 100644 --- a/vignettes/FOCUS_D.Rmd +++ b/vignettes/FOCUS_D.Rmd @@ -27,7 +27,7 @@ kinetics (SFO) to one metabolite named m1, which also degrades with SFO kinetics The call to mkinmod returns a degradation model. The differential equations represented in
R code can be found in the character vector `$diffs` of the `mkinmod` object. If
-the `ccSolve` package is installed and functional, the differential equation model
+the gcc compiler is installed and functional, the differential equation model
will be compiled from auto-generated C code.
diff --git a/vignettes/compiled_models.Rmd b/vignettes/compiled_models.Rmd index bac284c5..5d83cf3a 100644 --- a/vignettes/compiled_models.Rmd +++ b/vignettes/compiled_models.Rmd @@ -15,16 +15,14 @@ output: ```{r, include = FALSE}
library(knitr)
opts_chunk$set(tidy = FALSE, cache = TRUE)
-if (!require("ccSolve"))
- message("Please install the ccSolve package for this vignette to produce sensible output")
-
```
# Benchmark for a model that can also be solved with Eigenvalues
This evaluation is taken from the example section of mkinfit. When using an mkin version
-greater than 0.9-36 and the ccSolve package is installed and functional, you will get a
-message that the model is being compiled when defining a model using mkinmod.
+equal to or greater than 0.9-36 and a compiler (gcc) is installed, you will see
+a message that the model is being compiled from autogenerated C code when
+defining a model using mkinmod.
```{r create_SFO_SFO}
library("mkin")
@@ -83,5 +81,5 @@ smb.2["median"]/smb.2["deSolve, compiled", "median"] ```
-Here we get a performance benefit of more than a factor of 8 using the version
-of the differential equation model compiled from C code using the ccSolve package!
+Here we get a performance benefit of more than a factor of 10 using the version
+of the differential equation model compiled from C code using the inline package!
|