diff options
Diffstat (limited to 'vignettes')
| -rw-r--r-- | vignettes/FOCUS_L.html | 72 | ||||
| -rw-r--r-- | vignettes/FOCUS_Z.pdf | bin | 214130 -> 214013 bytes | |||
| -rw-r--r-- | vignettes/mkin.pdf | bin | 160326 -> 160326 bytes |
3 files changed, 33 insertions, 39 deletions
diff --git a/vignettes/FOCUS_L.html b/vignettes/FOCUS_L.html index 614fcf32..ab7ccaee 100644 --- a/vignettes/FOCUS_L.html +++ b/vignettes/FOCUS_L.html @@ -193,13 +193,7 @@ hr { report, p. 284:</p> <pre><code class="r">library("mkin") -</code></pre> - -<pre><code>## Loading required package: minpack.lm -## Loading required package: rootSolve -</code></pre> - -<pre><code class="r">FOCUS_2006_L1 = data.frame( +FOCUS_2006_L1 = data.frame( t = rep(c(0, 1, 2, 3, 5, 7, 14, 21, 30), each = 2), parent = c(88.3, 91.4, 85.6, 84.5, 78.9, 77.6, 72.0, 71.9, 50.3, 59.4, 47.0, 45.1, @@ -223,8 +217,8 @@ summary(m.L1.SFO) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:29 2014 -## Date of summary: Mon Jul 21 09:14:29 2014 +## Date of fit: Thu Jul 24 10:32:09 2014 +## Date of summary: Thu Jul 24 10:32:09 2014 ## ## Equations: ## [1] d_parent = - k_parent_sink * parent @@ -315,7 +309,7 @@ summary(m.L1.SFO) <pre><code class="r">mkinresplot(m.L1.SFO, ylab = "Observed", xlab = "Time") </code></pre> -<p><img 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alt="plot of chunk unnamed-chunk-5"/> </p> <p>For comparison, the FOMC model is fitted as well, and the chi<sup>2</sup> error level is checked.</p> @@ -326,15 +320,15 @@ summary(m.L1.FOMC, data = FALSE) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:30 2014 -## Date of summary: Mon Jul 21 09:14:30 2014 +## Date of fit: Thu Jul 24 10:32:10 2014 +## Date of summary: Thu Jul 24 10:32:11 2014 ## ## Equations: ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 53 model solutions performed in 0.32 s +## Fitted with method Marq using 53 model solutions performed in 0.321 s ## ## Weighting: none ## @@ -420,15 +414,15 @@ summary(m.L2.SFO) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:30 2014 -## Date of summary: Mon Jul 21 09:14:30 2014 +## Date of fit: Thu Jul 24 10:32:11 2014 +## Date of summary: Thu Jul 24 10:32:11 2014 ## ## Equations: ## [1] d_parent = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 29 model solutions performed in 0.155 s +## Fitted with method Marq using 29 model solutions performed in 0.196 s ## ## Weighting: none ## @@ -502,7 +496,7 @@ plot(m.L2.SFO) mkinresplot(m.L2.SFO) </code></pre> -<p><img 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alt="plot of chunk unnamed-chunk-9"/> </p> <p>In the FOCUS kinetics report, it is stated that there is no apparent systematic error observed from the residual plot up to the measured DT90 (approximately at @@ -523,22 +517,22 @@ plot(m.L2.FOMC) mkinresplot(m.L2.FOMC) </code></pre> -<p><img 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alt="plot of chunk unnamed-chunk-10"/> </p> <pre><code class="r">summary(m.L2.FOMC, data = FALSE) </code></pre> <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:31 2014 -## Date of summary: Mon Jul 21 09:14:31 2014 +## Date of fit: Thu Jul 24 10:32:11 2014 +## Date of summary: Thu Jul 24 10:32:11 2014 ## ## Equations: ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 35 model solutions performed in 0.199 s +## Fitted with method Marq using 35 model solutions performed in 0.223 s ## ## Weighting: none ## @@ -616,15 +610,15 @@ plot(m.L2.DFOP) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:31 2014 -## Date of summary: Mon Jul 21 09:14:31 2014 +## Date of fit: Thu Jul 24 10:32:12 2014 +## Date of summary: Thu Jul 24 10:32:12 2014 ## ## Equations: ## [1] d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 43 model solutions performed in 0.241 s +## Fitted with method Marq using 43 model solutions performed in 0.271 s ## ## Weighting: none ## @@ -703,15 +697,15 @@ plot(m.L3.SFO) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:32 2014 -## Date of summary: Mon Jul 21 09:14:32 2014 +## Date of fit: Thu Jul 24 10:32:14 2014 +## Date of summary: Thu Jul 24 10:32:14 2014 ## ## Equations: ## [1] d_parent = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 44 model solutions performed in 0.242 s +## Fitted with method Marq using 44 model solutions performed in 0.251 s ## ## Weighting: none ## @@ -789,15 +783,15 @@ plot(m.L3.FOMC) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:32 2014 -## Date of summary: Mon Jul 21 09:14:32 2014 +## Date of fit: Thu Jul 24 10:32:14 2014 +## Date of summary: Thu Jul 24 10:32:14 2014 ## ## Equations: ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 26 model solutions performed in 0.143 s +## Fitted with method Marq using 26 model solutions performed in 0.154 s ## ## Weighting: none ## @@ -862,15 +856,15 @@ plot(m.L3.DFOP) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:32 2014 -## Date of summary: Mon Jul 21 09:14:32 2014 +## Date of fit: Thu Jul 24 10:32:14 2014 +## Date of summary: Thu Jul 24 10:32:14 2014 ## ## Equations: ## [1] d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 37 model solutions performed in 0.21 s +## Fitted with method Marq using 37 model solutions performed in 0.228 s ## ## Weighting: none ## @@ -958,15 +952,15 @@ plot(m.L4.SFO) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:33 2014 -## Date of summary: Mon Jul 21 09:14:33 2014 +## Date of fit: Thu Jul 24 10:32:15 2014 +## Date of summary: Thu Jul 24 10:32:15 2014 ## ## Equations: ## [1] d_parent = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 20 model solutions performed in 0.109 s +## Fitted with method Marq using 20 model solutions performed in 0.141 s ## ## Weighting: none ## @@ -1033,15 +1027,15 @@ plot(m.L4.FOMC) <pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 21 09:14:33 2014 -## Date of summary: Mon Jul 21 09:14:33 2014 +## Date of fit: Thu Jul 24 10:32:15 2014 +## Date of summary: Thu Jul 24 10:32:15 2014 ## ## Equations: ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 48 model solutions performed in 0.26 s +## Fitted with method Marq using 48 model solutions performed in 0.296 s ## ## Weighting: none ## diff --git a/vignettes/FOCUS_Z.pdf b/vignettes/FOCUS_Z.pdf Binary files differindex 43f3e2e2..f7b0a65a 100644 --- a/vignettes/FOCUS_Z.pdf +++ b/vignettes/FOCUS_Z.pdf diff --git a/vignettes/mkin.pdf b/vignettes/mkin.pdf Binary files differindex b69ddddc..0cc413a1 100644 --- a/vignettes/mkin.pdf +++ b/vignettes/mkin.pdf |