diff options
Diffstat (limited to 'vignettes')
| -rw-r--r-- | vignettes/FOCUS_L.html | 112 | ||||
| -rw-r--r-- | vignettes/FOCUS_Z.pdf | bin | 220196 -> 220177 bytes |
2 files changed, 61 insertions, 51 deletions
diff --git a/vignettes/FOCUS_L.html b/vignettes/FOCUS_L.html index ab7ccaee..2dd186de 100644 --- a/vignettes/FOCUS_L.html +++ b/vignettes/FOCUS_L.html @@ -193,7 +193,13 @@ hr { report, p. 284:</p> <pre><code class="r">library("mkin") -FOCUS_2006_L1 = data.frame( +</code></pre> + +<pre><code>## Loading required package: minpack.lm +## Loading required package: rootSolve +</code></pre> + +<pre><code class="r">FOCUS_2006_L1 = data.frame( t = rep(c(0, 1, 2, 3, 5, 7, 14, 21, 30), each = 2), parent = c(88.3, 91.4, 85.6, 84.5, 78.9, 77.6, 72.0, 71.9, 50.3, 59.4, 47.0, 45.1, @@ -215,17 +221,17 @@ given in the FOCUS report. </p> summary(m.L1.SFO) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:09 2014 -## Date of summary: Thu Jul 24 10:32:09 2014 +## Date of fit: Mon Aug 25 10:34:14 2014 +## Date of summary: Mon Aug 25 10:34:14 2014 ## ## Equations: -## [1] d_parent = - k_parent_sink * parent +## d_parent = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 14 model solutions performed in 0.081 s +## Fitted with method Marq using 14 model solutions performed in 0.083 s ## ## Weighting: none ## @@ -318,17 +324,17 @@ is checked.</p> summary(m.L1.FOMC, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:10 2014 -## Date of summary: Thu Jul 24 10:32:11 2014 +## Date of fit: Mon Aug 25 10:34:17 2014 +## Date of summary: Mon Aug 25 10:34:17 2014 ## ## Equations: -## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent +## d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 53 model solutions performed in 0.321 s +## Fitted with method Marq using 53 model solutions performed in 0.3 s ## ## Weighting: none ## @@ -412,17 +418,17 @@ FOCUS_2006_L2_mkin <- mkin_wide_to_long(FOCUS_2006_L2) summary(m.L2.SFO) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:11 2014 -## Date of summary: Thu Jul 24 10:32:11 2014 +## Date of fit: Mon Aug 25 10:34:17 2014 +## Date of summary: Mon Aug 25 10:34:17 2014 ## ## Equations: -## [1] d_parent = - k_parent_sink * parent +## d_parent = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 29 model solutions performed in 0.196 s +## Fitted with method Marq using 29 model solutions performed in 0.184 s ## ## Weighting: none ## @@ -522,17 +528,17 @@ mkinresplot(m.L2.FOMC) <pre><code class="r">summary(m.L2.FOMC, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:11 2014 -## Date of summary: Thu Jul 24 10:32:11 2014 +## Date of fit: Mon Aug 25 10:34:17 2014 +## Date of summary: Mon Aug 25 10:34:17 2014 ## ## Equations: -## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent +## d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 35 model solutions performed in 0.223 s +## Fitted with method Marq using 35 model solutions performed in 0.2 s ## ## Weighting: none ## @@ -608,17 +614,19 @@ plot(m.L2.DFOP) <pre><code class="r">summary(m.L2.DFOP, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:12 2014 -## Date of summary: Thu Jul 24 10:32:12 2014 +## Date of fit: Mon Aug 25 10:34:18 2014 +## Date of summary: Mon Aug 25 10:34:18 2014 ## ## Equations: -## [1] d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent +## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * +## time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * +## time))) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 43 model solutions performed in 0.271 s +## Fitted with method Marq using 43 model solutions performed in 0.26 s ## ## Weighting: none ## @@ -695,17 +703,17 @@ plot(m.L3.SFO) <pre><code class="r">summary(m.L3.SFO) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:14 2014 -## Date of summary: Thu Jul 24 10:32:14 2014 +## Date of fit: Mon Aug 25 10:34:18 2014 +## Date of summary: Mon Aug 25 10:34:18 2014 ## ## Equations: -## [1] d_parent = - k_parent_sink * parent +## d_parent = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 44 model solutions performed in 0.251 s +## Fitted with method Marq using 44 model solutions performed in 0.252 s ## ## Weighting: none ## @@ -781,17 +789,17 @@ plot(m.L3.FOMC) <pre><code class="r">summary(m.L3.FOMC, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:14 2014 -## Date of summary: Thu Jul 24 10:32:14 2014 +## Date of fit: Mon Aug 25 10:34:19 2014 +## Date of summary: Mon Aug 25 10:34:19 2014 ## ## Equations: -## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent +## d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 26 model solutions performed in 0.154 s +## Fitted with method Marq using 26 model solutions performed in 0.148 s ## ## Weighting: none ## @@ -854,17 +862,19 @@ plot(m.L3.DFOP) <pre><code class="r">summary(m.L3.DFOP, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:14 2014 -## Date of summary: Thu Jul 24 10:32:14 2014 +## Date of fit: Mon Aug 25 10:34:19 2014 +## Date of summary: Mon Aug 25 10:34:19 2014 ## ## Equations: -## [1] d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent +## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * +## time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * +## time))) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 37 model solutions performed in 0.228 s +## Fitted with method Marq using 37 model solutions performed in 0.236 s ## ## Weighting: none ## @@ -950,17 +960,17 @@ plot(m.L4.SFO) <pre><code class="r">summary(m.L4.SFO, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:15 2014 -## Date of summary: Thu Jul 24 10:32:15 2014 +## Date of fit: Mon Aug 25 10:34:19 2014 +## Date of summary: Mon Aug 25 10:34:19 2014 ## ## Equations: -## [1] d_parent = - k_parent_sink * parent +## d_parent = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 20 model solutions performed in 0.141 s +## Fitted with method Marq using 20 model solutions performed in 0.123 s ## ## Weighting: none ## @@ -1025,17 +1035,17 @@ plot(m.L4.FOMC) <pre><code class="r">summary(m.L4.FOMC, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.32 +<pre><code>## mkin version: 0.9.33 ## R version: 3.1.1 -## Date of fit: Thu Jul 24 10:32:15 2014 -## Date of summary: Thu Jul 24 10:32:15 2014 +## Date of fit: Mon Aug 25 10:34:20 2014 +## Date of summary: Mon Aug 25 10:34:20 2014 ## ## Equations: -## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent +## d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Marq using 48 model solutions performed in 0.296 s +## Fitted with method Marq using 48 model solutions performed in 0.281 s ## ## Weighting: none ## diff --git a/vignettes/FOCUS_Z.pdf b/vignettes/FOCUS_Z.pdf Binary files differindex 210ce099..ca6d2506 100644 --- a/vignettes/FOCUS_Z.pdf +++ b/vignettes/FOCUS_Z.pdf |