diff options
Diffstat (limited to 'vignettes')
| -rw-r--r-- | vignettes/FOCUS_L.html | 118 | ||||
| -rw-r--r-- | vignettes/FOCUS_Z.pdf | bin | 212996 -> 214130 bytes | |||
| -rw-r--r-- | vignettes/mkin.pdf | bin | 160326 -> 160326 bytes |
3 files changed, 67 insertions, 51 deletions
diff --git a/vignettes/FOCUS_L.html b/vignettes/FOCUS_L.html index bb02ec3e..85fadbfe 100644 --- a/vignettes/FOCUS_L.html +++ b/vignettes/FOCUS_L.html @@ -193,7 +193,13 @@ hr { report, p. 284</p> <pre><code class="r">library("mkin") -FOCUS_2006_L1 = data.frame( +</code></pre> + +<pre><code>## Loading required package: minpack.lm +## Loading required package: rootSolve +</code></pre> + +<pre><code class="r">FOCUS_2006_L1 = data.frame( t = rep(c(0, 1, 2, 3, 5, 7, 14, 21, 30), each = 2), parent = c(88.3, 91.4, 85.6, 84.5, 78.9, 77.6, 72.0, 71.9, 50.3, 59.4, 47.0, 45.1, @@ -223,16 +229,17 @@ FOCUS report.</p> summary(m.L1.SFO) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:20 2014 -## Date of summary: Mon Jul 14 20:32:20 2014 +## Date of fit: Thu Jul 17 12:37:41 2014 +## Date of summary: Thu Jul 17 12:37:41 2014 ## ## Equations: ## [1] d_parent = - k_parent_sink * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 14 model solutions performed in 0.087 s ## ## Weighting: none ## @@ -325,16 +332,17 @@ is checked.</p> summary(m.L1.FOMC, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:20 2014 -## Date of summary: Mon Jul 14 20:32:20 2014 +## Date of fit: Thu Jul 17 12:37:42 2014 +## Date of summary: Thu Jul 17 12:37:42 2014 ## ## Equations: ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 45 model solutions performed in 0.266 s ## ## Weighting: none ## @@ -417,16 +425,17 @@ FOCUS_2006_L2_mkin <- mkin_wide_to_long(FOCUS_2006_L2) summary(m.L2.SFO) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:20 2014 -## Date of summary: Mon Jul 14 20:32:20 2014 +## Date of fit: Thu Jul 17 12:37:42 2014 +## Date of summary: Thu Jul 17 12:37:42 2014 ## ## Equations: ## [1] d_parent = - k_parent_sink * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 32 model solutions performed in 0.357 s ## ## Weighting: none ## @@ -526,16 +535,17 @@ mkinresplot(m.L2.FOMC) <pre><code class="r">summary(m.L2.FOMC, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:21 2014 -## Date of summary: Mon Jul 14 20:32:21 2014 +## Date of fit: Thu Jul 17 12:37:43 2014 +## Date of summary: Thu Jul 17 12:37:43 2014 ## ## Equations: ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 39 model solutions performed in 0.235 s ## ## Weighting: none ## @@ -611,16 +621,17 @@ plot(m.L2.DFOP) <pre><code class="r">summary(m.L2.DFOP, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:23 2014 -## Date of summary: Mon Jul 14 20:32:23 2014 +## Date of fit: Thu Jul 17 12:37:44 2014 +## Date of summary: Thu Jul 17 12:37:44 2014 ## ## Equations: ## [1] d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 54 model solutions performed in 0.423 s ## ## Weighting: none ## @@ -697,16 +708,17 @@ plot(m.L3.SFO) <pre><code class="r">summary(m.L3.SFO) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:23 2014 -## Date of summary: Mon Jul 14 20:32:23 2014 +## Date of fit: Thu Jul 17 12:37:45 2014 +## Date of summary: Thu Jul 17 12:37:45 2014 ## ## Equations: ## [1] d_parent = - k_parent_sink * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 44 model solutions performed in 0.241 s ## ## Weighting: none ## @@ -782,16 +794,17 @@ plot(m.L3.FOMC) <pre><code class="r">summary(m.L3.FOMC, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:24 2014 -## Date of summary: Mon Jul 14 20:32:24 2014 +## Date of fit: Thu Jul 17 12:37:45 2014 +## Date of summary: Thu Jul 17 12:37:45 2014 ## ## Equations: ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 26 model solutions performed in 0.208 s ## ## Weighting: none ## @@ -854,16 +867,17 @@ plot(m.L3.DFOP) <pre><code class="r">summary(m.L3.DFOP, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:24 2014 -## Date of summary: Mon Jul 14 20:32:24 2014 +## Date of fit: Thu Jul 17 12:37:46 2014 +## Date of summary: Thu Jul 17 12:37:46 2014 ## ## Equations: ## [1] d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 37 model solutions performed in 0.338 s ## ## Weighting: none ## @@ -944,16 +958,17 @@ plot(m.L4.SFO) <pre><code class="r">summary(m.L4.SFO, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:27 2014 -## Date of summary: Mon Jul 14 20:32:27 2014 +## Date of fit: Thu Jul 17 12:37:46 2014 +## Date of summary: Thu Jul 17 12:37:46 2014 ## ## Equations: ## [1] d_parent = - k_parent_sink * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 20 model solutions performed in 0.127 s ## ## Weighting: none ## @@ -1018,16 +1033,17 @@ plot(m.L4.FOMC) <pre><code class="r">summary(m.L4.FOMC, data = FALSE) </code></pre> -<pre><code>## mkin version: 0.9.31 +<pre><code>## mkin version: 0.9.32 ## R version: 3.1.1 -## Date of fit: Mon Jul 14 20:32:28 2014 -## Date of summary: Mon Jul 14 20:32:28 2014 +## Date of fit: Thu Jul 17 12:37:46 2014 +## Date of summary: Thu Jul 17 12:37:46 2014 ## ## Equations: ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent ## -## Method used for solution of differential equation system: -## analytical +## Model predictions using solution type analytical +## +## Fitted with method Marq using 53 model solutions performed in 0.355 s ## ## Weighting: none ## diff --git a/vignettes/FOCUS_Z.pdf b/vignettes/FOCUS_Z.pdf Binary files differindex 559504cc..43f3e2e2 100644 --- a/vignettes/FOCUS_Z.pdf +++ b/vignettes/FOCUS_Z.pdf diff --git a/vignettes/mkin.pdf b/vignettes/mkin.pdf Binary files differindex f06d38f9..9cf1b3e5 100644 --- a/vignettes/mkin.pdf +++ b/vignettes/mkin.pdf |