| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2020-05-11 | Release to CRANv0.9.50.1 | Johannes Ranke | 1 | -0/+1 | |
| 2019-10-21 | Refactor mkinfit, infrastructure work | Johannes Ranke | 1 | -0/+1 | |
| mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7. | |||||
| 2019-05-07 | After the OLS step, use OLS parameter estimates | Johannes Ranke | 1 | -0/+1 | |
| - Fix the respective error in the code - Static documentation rebuilt by pkgdown | |||||
| 2019-05-02 | Prepare for CRAN release | Johannes Ranke | 1 | -0/+1 | |
| - Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs | |||||
| 2019-03-04 | Fix .Rbuildignore | Johannes Ranke | 1 | -14/+13 | |
| thanks to Kurt Hornik for pointing out that perl regexp syntax is needed, not shell glob syntax | |||||
| 2018-09-15 | Ignore .travis.yml, add build status | Johannes Ranke | 1 | -0/+1 | |
| 2018-07-18 | Correct references to the Rocke and Lorenzato model | Johannes Ranke | 1 | -0/+1 | |
| Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation. | |||||
| 2018-03-09 | Another rebuild of the static docs | Johannes Ranke | 1 | -2/+2 | |
| Now with rbenchmark installed, to get results for the compiled_models vignette | |||||
| 2016-12-08 | Documentation and Makefile improvements | Johannes Ranke | 1 | -0/+1 | |
| - Fix the remaining links to static docs on r-forge in README - Build mkin_*.tar.gz packages in current directory - check and test (test.log unchanged) | |||||
| 2016-12-07 | Use latex in plots when using tikzDevice | Johannes Ranke | 1 | -0/+1 | |
| 2016-11-17 | Satisfy CRAN checks, also on R-devel | Johannes Ranke | 1 | -1/+2 | |
| - Use https for canonical R URLs - Update CAKE URL to one giving a valid SSL certificate | |||||
| 2016-11-17 | Remove trailing whitespace, clean headers | Johannes Ranke | 1 | -0/+1 | |
| Also ignore test.R in the top level directory, as it is not meant to be public | |||||
| 2016-10-13 | Cleaning up a bit | Johannes Ranke | 1 | -8/+6 | |
| 2015-11-09 | Rebuild vignettes and static documentation | Johannes Ranke | 1 | -2/+2 | |
| 2015-10-02 | Some maintenance | Johannes Ranke | 1 | -19/+19 | |
| 2015-08-22 | Generate README.html for my cgit setup on jrwb.de | Johannes Ranke | 1 | -1/+1 | |
| 2015-07-22 | index.r for grouping help topics in static documentation | Johannes Ranke | 1 | -0/+1 | |
| 2015-07-20 | Ignore a test.R file | Johannes Ranke | 1 | -0/+1 | |
| 2015-07-20 | Avoid error message for SFORB in endpoints, updates | Johannes Ranke | 1 | -0/+1 | |
| 2015-06-29 | Do not include plots and R output in README | Johannes Ranke | 1 | -1/+0 | |
| This does not get rendered properly on CRAN, and is easily replaced by links to the static documentation on R-Forge. | |||||
| 2015-06-26 | More plotting in help files, fix Make- and .*ignore files | Johannes Ranke | 1 | -0/+1 | |
| 2015-06-25 | Add CRAN release dates to NEWS.md | Johannes Ranke | 1 | -1/+0 | |
| Remove leftovers from using a plain text NEWS file | |||||
| 2015-06-23 | Version bump, keep logs of build, check and test | Johannes Ranke | 1 | -0/+3 | |
| 2015-06-23 | Remove Rplots.pdf that is being built by staticdocs | Johannes Ranke | 1 | -0/+1 | |
| 2015-06-22 | Another reorganisation of vignette building by GNUmakefile | Johannes Ranke | 1 | -0/+2 | |
| 2015-06-22 | Version bump, correct benchmark in vignette/compiled_models | Johannes Ranke | 1 | -15/+13 | |
| Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed. | |||||
| 2015-05-19 | Include output in README, use mkinsub() in example code | Johannes Ranke | 1 | -0/+2 | |
| 2014-11-13 | Exclude vignette building timestamp as R CMD check complains | Johannes Ranke | 1 | -0/+1 | |
| 2014-06-30 | Format the NEWS file in markdown, add Makefile target | Johannes Ranke | 1 | -0/+1 | |
| 2014-05-08 | Support building static documentation, build it | Johannes Ranke | 1 | -0/+1 | |
| 2014-05-05 | Fix .Rbuildignore, control font size in mkinparplot | Johannes Ranke | 1 | -1/+1 | |
| 2014-05-02 | Next try at showing the screenshot, ignore in build | Johannes Ranke | 1 | -0/+1 | |
| 2013-11-17 | Conflicts: | jranke | 1 | -0/+13 | |
| README.md TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@163 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2013-11-11 | - Add a simple makefile | jranke | 1 | -0/+1 | |
| - Add a .Rbuildignore file - Clean up unit tests a bit - Test the gwidgets notebook from the knitr demo git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@150 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
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index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
| aboutsummaryrefslogtreecommitdiff |
path: root/.Rbuildignore