Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2024-07-23 | Go back to 30 minutes for coverage | Ranke Johannes | 1 | -1/+1 | |
Apparently, the problem was the log silence timeout of 10 minutes on my repository, thankfully the travis support increased it to 30 minutes. | |||||
2024-07-23 | Another attempt to fix coverage on travis | Ranke Johannes | 1 | -1/+1 | |
2024-07-23 | Try to convince travis to complete the coverage report | Ranke Johannes | 1 | -1/+1 | |
2023-08-09 | Go back to jammy on travis | Johannes Ranke | 1 | -1/+1 | |
As it passed all tests | |||||
2023-08-09 | Go back to focal, skip drat repo on travis | Ranke Johannes | 1 | -2/+1 | |
2023-08-09 | Try jammy on travis | Ranke Johannes | 1 | -1/+1 | |
2023-08-09 | Don't install saemix 3.2 from github any more | Ranke Johannes | 1 | -1/+0 | |
Emmanuelle has made an official release to CRAN in June | |||||
2023-04-16 | Make travis wait longer also for codecov coverage | Johannes Ranke | 1 | -1/+1 | |
2023-04-15 | Need even more time for tests now | Johannes Ranke | 1 | -1/+1 | |
2023-04-15 | Fix the travis_wait command | Johannes Ranke | 1 | -1/+1 | |
2023-04-15 | The tests run longer now, so make travis wait | Johannes Ranke | 1 | -1/+1 | |
2023-03-14 | deSolve 1.35 is on CRAN now, thanks Thomas! | Johannes Ranke | 1 | -1/+0 | |
2023-02-18 | Tell travis to take deSolve from drat repo | Johannes Ranke | 1 | -0/+1 | |
It seems that eddelbuettel/r-ci#10 is still bugging me | |||||
2023-02-17 | Update benchmark results for 7950X | Johannes Ranke | 1 | -0/+1 | |
2022-11-11 | Simplify travis config | Johannes Ranke | 1 | -10/+1 | |
2022-10-25 | Another attempt to restore coverage on codecov | Johannes Ranke | 1 | -2/+3 | |
2022-10-25 | Install covr on travis to restore codecov coverage | Johannes Ranke | 1 | -1/+1 | |
2022-09-30 | Install development version of saemix on travis | Johannes Ranke | 1 | -0/+1 | |
I need this version for the parhist.multistart method, otherwise results for the two-component error model parameters can switch between positive and negative values. | |||||
2022-09-30 | r2u is now the default for r-ci | Johannes Ranke | 1 | -1/+1 | |
2022-09-16 | Tell travis to wait for coverage report | Johannes Ranke | 1 | -1/+1 | |
2022-07-21 | Try to tell covr that Travis is not CRAN | Johannes Ranke | 1 | -1/+1 | |
2022-07-21 | Try coverage from r-ci, re-add badges | Johannes Ranke | 1 | -4/+4 | |
2022-07-21 | Try to explicitly install nlme from CRAN | Johannes Ranke | 1 | -0/+1 | |
to get the current version | |||||
2022-07-21 | Try the r2u variant | Johannes Ranke | 1 | -5/+4 | |
2022-07-21 | Don't use BSPM as it fails due to low nlme version | Johannes Ranke | 1 | -3/+4 | |
2022-07-21 | Try Travis with Dirks run.sh from eddelbuettel/r-ci | Johannes Ranke | 1 | -0/+36 | |
2022-07-21 | Remove travis config as R seems to be unmaintained there | Johannes Ranke | 1 | -25/+0 | |
See https://travis-ci.community/t/please-update-the-r-version-used-for-r-release-to-r-4-1-0/11886 and the Pull request referenced there, and the message by Gabor which I found today: https://travis-ci.community/t/about-the-r-category/748/2 | |||||
2022-07-21 | Update Travis config | Johannes Ranke | 1 | -1/+3 | |
- Use current R release - Add system libraries used by textshaping, pulled in by pkgdown | |||||
2022-03-03 | Add R-devel to travis config | Johannes Ranke | 1 | -0/+1 | |
2022-03-01 | Let travis wait for covr | Johannes Ranke | 1 | -1/+1 | |
as the last build timed out after not receiving output for 10 min in this step. | |||||
2022-03-01 | Use current R in travis | Johannes Ranke | 1 | -1/+1 | |
2022-02-28 | Update travis config and _pkgdown.yml | Johannes Ranke | 1 | -4/+0 | |
2021-11-17 | Use the official master branch of saemix | Johannes Ranke | 1 | -1/+1 | |
As my changes were merged meanwhile | |||||
2021-09-16 | Remove GITHUB_PAT from .travis.yml | Johannes Ranke | 1 | -3/+0 | |
I found that I can create a PAT with no extra privileges, thanks to https://itsalocke.com/blog/using-travis-make-sure-you-use-a-github-pat/ so I will add this to my travis account. | |||||
2021-09-16 | Try to diagnose the problem with remotes | Johannes Ranke | 1 | -0/+2 | |
2021-09-16 | Try to make remotes on travis work again | Johannes Ranke | 1 | -0/+1 | |
This tries to unset the environment variable GITHUB_PAT which seems to get in the way for installing using remotes::install_github on travis. | |||||
2021-09-16 | Merge branch 'master' into nlmixr | Johannes Ranke | 1 | -0/+1 | |
2021-09-15 | Use my drat repo for saemix master | Johannes Ranke | 1 | -3/+1 | |
2021-09-15 | Try to make remotes::install_github work again | Johannes Ranke | 1 | -0/+1 | |
2021-07-23 | Merge branch 'master' into nlmixr | Johannes Ranke | 1 | -3/+2 | |
After the merge, run make test and accept the new snapshot for the mixed model fit for an nlme object | |||||
2021-07-23 | Try explicit R version for travis | Johannes Ranke | 1 | -1/+1 | |
2021-07-23 | Update travis config, attempting to get R 4.1.0 | Johannes Ranke | 1 | -2/+0 | |
2021-07-23 | Rerun tests, use current vdiffr on travis | Johannes Ranke | 1 | -0/+1 | |
2021-07-23 | Fix travis config | Johannes Ranke | 1 | -0/+4 | |
to use up to date versions of nlme, covr and devtools | |||||
2021-06-11 | Fix package name for travis config... | Johannes Ranke | 1 | -1/+1 | |
2021-06-11 | Fix travis syntax | Johannes Ranke | 1 | -1/+4 | |
2021-06-11 | Add packages necessary for shell commands on travis | Johannes Ranke | 1 | -1/+1 | |
2021-06-11 | Attempt to satisfy nlme version requirement on travis | Johannes Ranke | 1 | -0/+1 | |
2021-06-11 | Add system requirements for symengine on Travis | Johannes Ranke | 1 | -0/+1 | |
nlmixr depends on symengine | |||||
2021-06-09 | Rudimentary support for setting up nlmixr models | Johannes Ranke | 1 | -0/+2 | |
- All degradation models are specified as ODE models. This appears to be fast enough - Error models are being translated to nlmixr as close to the mkin error model as possible. When using the 'saem' backend, it appears not to be possible to use the same error model for more than one observed variable - No support yet for models with parallel formation of metabolites, where the ilr transformation is used in mkin per default - There is a bug in nlmixr which appears to be triggered if the data are not balanced, see nlmixrdevelopment/nlmixr#530 - There is a print and a plot method, the summary method is not finished |