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2023-08-09Try jammy on travisRanke Johannes1-1/+1
2023-08-09Don't install saemix 3.2 from github any moreRanke Johannes1-1/+0
Emmanuelle has made an official release to CRAN in June
2023-04-16Make travis wait longer also for codecov coverageJohannes Ranke1-1/+1
2023-04-15Need even more time for tests nowJohannes Ranke1-1/+1
2023-04-15Fix the travis_wait commandJohannes Ranke1-1/+1
2023-04-15The tests run longer now, so make travis waitJohannes Ranke1-1/+1
2023-03-14deSolve 1.35 is on CRAN now, thanks Thomas!Johannes Ranke1-1/+0
2023-02-18Tell travis to take deSolve from drat repoJohannes Ranke1-0/+1
It seems that eddelbuettel/r-ci#10 is still bugging me
2023-02-17Update benchmark results for 7950XJohannes Ranke1-0/+1
2022-11-11Simplify travis configJohannes Ranke1-10/+1
2022-10-25Another attempt to restore coverage on codecovJohannes Ranke1-2/+3
2022-10-25Install covr on travis to restore codecov coverageJohannes Ranke1-1/+1
2022-09-30Install development version of saemix on travisJohannes Ranke1-0/+1
I need this version for the parhist.multistart method, otherwise results for the two-component error model parameters can switch between positive and negative values.
2022-09-30r2u is now the default for r-ciJohannes Ranke1-1/+1
2022-09-16Tell travis to wait for coverage reportJohannes Ranke1-1/+1
2022-07-21Try to tell covr that Travis is not CRANJohannes Ranke1-1/+1
2022-07-21Try coverage from r-ci, re-add badgesJohannes Ranke1-4/+4
2022-07-21Try to explicitly install nlme from CRANJohannes Ranke1-0/+1
to get the current version
2022-07-21Try the r2u variantJohannes Ranke1-5/+4
2022-07-21Don't use BSPM as it fails due to low nlme versionJohannes Ranke1-3/+4
2022-07-21Try Travis with Dirks run.sh from eddelbuettel/r-ciJohannes Ranke1-0/+36
2022-07-21Remove travis config as R seems to be unmaintained thereJohannes Ranke1-25/+0
See https://travis-ci.community/t/please-update-the-r-version-used-for-r-release-to-r-4-1-0/11886 and the Pull request referenced there, and the message by Gabor which I found today: https://travis-ci.community/t/about-the-r-category/748/2
2022-07-21Update Travis configJohannes Ranke1-1/+3
- Use current R release - Add system libraries used by textshaping, pulled in by pkgdown
2022-03-03Add R-devel to travis configJohannes Ranke1-0/+1
2022-03-01Let travis wait for covrJohannes Ranke1-1/+1
as the last build timed out after not receiving output for 10 min in this step.
2022-03-01Use current R in travisJohannes Ranke1-1/+1
2022-02-28Update travis config and _pkgdown.ymlJohannes Ranke1-4/+0
2021-11-17Use the official master branch of saemixJohannes Ranke1-1/+1
As my changes were merged meanwhile
2021-09-16Remove GITHUB_PAT from .travis.ymlJohannes Ranke1-3/+0
I found that I can create a PAT with no extra privileges, thanks to https://itsalocke.com/blog/using-travis-make-sure-you-use-a-github-pat/ so I will add this to my travis account.
2021-09-16Try to diagnose the problem with remotesJohannes Ranke1-0/+2
2021-09-16Try to make remotes on travis work againJohannes Ranke1-0/+1
This tries to unset the environment variable GITHUB_PAT which seems to get in the way for installing using remotes::install_github on travis.
2021-09-16Merge branch 'master' into nlmixrJohannes Ranke1-0/+1
2021-09-15Use my drat repo for saemix masterJohannes Ranke1-3/+1
2021-09-15Try to make remotes::install_github work againJohannes Ranke1-0/+1
2021-07-23Merge branch 'master' into nlmixrJohannes Ranke1-3/+2
After the merge, run make test and accept the new snapshot for the mixed model fit for an nlme object
2021-07-23Try explicit R version for travisJohannes Ranke1-1/+1
2021-07-23Update travis config, attempting to get R 4.1.0Johannes Ranke1-2/+0
2021-07-23Rerun tests, use current vdiffr on travisJohannes Ranke1-0/+1
2021-07-23Fix travis configJohannes Ranke1-0/+4
to use up to date versions of nlme, covr and devtools
2021-06-11Fix package name for travis config...Johannes Ranke1-1/+1
2021-06-11Fix travis syntaxJohannes Ranke1-1/+4
2021-06-11Add packages necessary for shell commands on travisJohannes Ranke1-1/+1
2021-06-11Attempt to satisfy nlme version requirement on travisJohannes Ranke1-0/+1
2021-06-11Add system requirements for symengine on TravisJohannes Ranke1-0/+1
nlmixr depends on symengine
2021-06-09Rudimentary support for setting up nlmixr modelsJohannes Ranke1-0/+2
- All degradation models are specified as ODE models. This appears to be fast enough - Error models are being translated to nlmixr as close to the mkin error model as possible. When using the 'saem' backend, it appears not to be possible to use the same error model for more than one observed variable - No support yet for models with parallel formation of metabolites, where the ilr transformation is used in mkin per default - There is a bug in nlmixr which appears to be triggered if the data are not balanced, see nlmixrdevelopment/nlmixr#530 - There is a print and a plot method, the summary method is not finished
2021-02-06Reintroduce interface to saemixJohannes Ranke1-2/+0
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-01-22Switch to the master branch of saemix develJohannes Ranke1-1/+1
2020-12-17Another attempt to install saemixextension from my branchJohannes Ranke1-1/+1
2020-12-17nlme with varConstProp has been publishedJohannes Ranke1-4/+1
so no need to explicitly install it on Travis any more But as I reset my master branch of saemixextension to upstream we need my jr branch with the silent logLik method
2020-12-17Some package switched from git2r to gertJohannes Ranke1-0/+1
so we need libgit2-dev on the system

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