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2022-07-21Try coverage from r-ci, re-add badgesJohannes Ranke1-4/+4
2022-07-21Try to explicitly install nlme from CRANJohannes Ranke1-0/+1
to get the current version
2022-07-21Try the r2u variantJohannes Ranke1-5/+4
2022-07-21Don't use BSPM as it fails due to low nlme versionJohannes Ranke1-3/+4
2022-07-21Try Travis with Dirks run.sh from eddelbuettel/r-ciJohannes Ranke1-0/+36
2022-07-21Remove travis config as R seems to be unmaintained thereJohannes Ranke1-25/+0
See https://travis-ci.community/t/please-update-the-r-version-used-for-r-release-to-r-4-1-0/11886 and the Pull request referenced there, and the message by Gabor which I found today: https://travis-ci.community/t/about-the-r-category/748/2
2022-07-21Update Travis configJohannes Ranke1-1/+3
- Use current R release - Add system libraries used by textshaping, pulled in by pkgdown
2022-03-03Add R-devel to travis configJohannes Ranke1-0/+1
2022-03-01Let travis wait for covrJohannes Ranke1-1/+1
as the last build timed out after not receiving output for 10 min in this step.
2022-03-01Use current R in travisJohannes Ranke1-1/+1
2022-02-28Update travis config and _pkgdown.ymlJohannes Ranke1-4/+0
2021-11-17Use the official master branch of saemixJohannes Ranke1-1/+1
As my changes were merged meanwhile
2021-09-16Remove GITHUB_PAT from .travis.ymlJohannes Ranke1-3/+0
I found that I can create a PAT with no extra privileges, thanks to https://itsalocke.com/blog/using-travis-make-sure-you-use-a-github-pat/ so I will add this to my travis account.
2021-09-16Try to diagnose the problem with remotesJohannes Ranke1-0/+2
2021-09-16Try to make remotes on travis work againJohannes Ranke1-0/+1
This tries to unset the environment variable GITHUB_PAT which seems to get in the way for installing using remotes::install_github on travis.
2021-09-16Merge branch 'master' into nlmixrJohannes Ranke1-0/+1
2021-09-15Use my drat repo for saemix masterJohannes Ranke1-3/+1
2021-09-15Try to make remotes::install_github work againJohannes Ranke1-0/+1
2021-07-23Merge branch 'master' into nlmixrJohannes Ranke1-3/+2
After the merge, run make test and accept the new snapshot for the mixed model fit for an nlme object
2021-07-23Try explicit R version for travisJohannes Ranke1-1/+1
2021-07-23Update travis config, attempting to get R 4.1.0Johannes Ranke1-2/+0
2021-07-23Rerun tests, use current vdiffr on travisJohannes Ranke1-0/+1
2021-07-23Fix travis configJohannes Ranke1-0/+4
to use up to date versions of nlme, covr and devtools
2021-06-11Fix package name for travis config...Johannes Ranke1-1/+1
2021-06-11Fix travis syntaxJohannes Ranke1-1/+4
2021-06-11Add packages necessary for shell commands on travisJohannes Ranke1-1/+1
2021-06-11Attempt to satisfy nlme version requirement on travisJohannes Ranke1-0/+1
2021-06-11Add system requirements for symengine on TravisJohannes Ranke1-0/+1
nlmixr depends on symengine
2021-06-09Rudimentary support for setting up nlmixr modelsJohannes Ranke1-0/+2
- All degradation models are specified as ODE models. This appears to be fast enough - Error models are being translated to nlmixr as close to the mkin error model as possible. When using the 'saem' backend, it appears not to be possible to use the same error model for more than one observed variable - No support yet for models with parallel formation of metabolites, where the ilr transformation is used in mkin per default - There is a bug in nlmixr which appears to be triggered if the data are not balanced, see nlmixrdevelopment/nlmixr#530 - There is a print and a plot method, the summary method is not finished
2021-02-06Reintroduce interface to saemixJohannes Ranke1-2/+0
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-01-22Switch to the master branch of saemix develJohannes Ranke1-1/+1
2020-12-17Another attempt to install saemixextension from my branchJohannes Ranke1-1/+1
2020-12-17nlme with varConstProp has been publishedJohannes Ranke1-4/+1
so no need to explicitly install it on Travis any more But as I reset my master branch of saemixextension to upstream we need my jr branch with the silent logLik method
2020-12-17Some package switched from git2r to gertJohannes Ranke1-0/+1
so we need libgit2-dev on the system
2020-12-09Don't test on devel, skip failing vdiffr testsJohannes Ranke1-1/+0
I can test on R-devel locally for preparing releases
2020-12-08Test plots on R-release and cache packages againJohannes Ranke1-0/+1
2020-12-08Do not cache packagesJohannes Ranke1-2/+0
2020-12-08Install svglite from github on travisJohannes Ranke1-0/+1
2020-12-08Try to figure out while vdiffr failsJohannes Ranke1-4/+4
2020-10-22Try 2 to make travis use nlme from my drat repoJohannes Ranke1-1/+3
2020-10-22Improve interface to experimental version of nlmeJohannes Ranke1-2/+3
The experimental nlme version in my drat repository contains the variance function structure varConstProp which makes it possible to use the two-component error model in generalized nonlinear models using nlme::gnls() and in mixed effects models using nlme::nlme().
2020-10-15Get current nlme version from CRAN on TravisJohannes Ranke1-0/+2
Also commit the dontrun instruction for saemix I had wanted to commit and switch back to devel mode for pkgdown
2020-10-15Use my saemix repo for travisJohannes Ranke1-1/+1
The official repo is not installable at the moment
2020-10-15Reintroduce saemix helper functionsJohannes Ranke1-0/+2
2020-10-08saemix dev version is not installable at the momentJohannes Ranke1-2/+0
2020-06-15vdiffr dev version not really necessaryJohannes Ranke1-1/+0
2020-06-15Use current devel version of vdiffr on TravisJohannes Ranke1-1/+3
2020-05-26Use upstream saemix for travisJohannes Ranke1-1/+1
The necessary change has been merged
2020-05-25Tell travis where to really find the saemix version...Johannes Ranke1-1/+1
2020-05-25Tell travis where to find the required saemix versionJohannes Ranke1-0/+1

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