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2020-04-15Include random effects in starting parametersJohannes Ranke25-236/+420
- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-15Show fit information even if show_errmin = FALSEJohannes Ranke1-4/+5
2020-04-15A plot method for nlme.mmkin fitsJohannes Ranke16-118/+800
2020-04-14Add a nlme method for mmkin row objectsJohannes Ranke6-23/+270
2020-04-14Keep order of datasets in nlme_data, add a plotJohannes Ranke5-6/+51
2020-04-10Address build config validation hintsJohannes Ranke1-2/+4
2020-04-10Improve nlme function docsJohannes Ranke15-75/+162
2020-04-10Trigger rebuild after deleting caches on travisJohannes Ranke1-1/+1
According to the hint of @jimhester received in the Travis Forum - thanks!
2020-04-09Add another visual test for coverageJohannes Ranke3-17/+151
2020-04-09Travis: Reduce another test toleranceJohannes Ranke1-1/+2
2020-04-09Tests on Travis: Residuals tolerance and skip another plotJohannes Ranke2-4/+4
2020-04-09Improve test coverage and fix nlme testJohannes Ranke7-21/+370
No idea why I had to do more assignments all of a sudden in test_nlme.R
2020-04-09Try mkinerrplot for obs and tc on Travis againJohannes Ranke2-1/+59
2020-04-08Use two assignments to avoid skipping another testJohannes Ranke2-16/+16
2020-04-08Make the nlme test file work with testthatJohannes Ranke3-22/+16
2020-04-07Add some tests for the nlme convenience functionsJohannes Ranke6-15/+89
2020-04-07Improve documentation of mmkin objectsJohannes Ranke1-2/+3
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke7-11/+222
2020-04-04Add three functions to facilitate the use of nlmeJohannes Ranke11-508/+368
2020-04-03Merge branch 'master' into mxkinJohannes Ranke47-701/+1328
Merge DESCRIPTION manually to combine dependencies and rerun check to update check.log
2020-04-03Compiled models article, reduce distractionsJohannes Ranke16-351/+674
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2020-03-31Update NEWS, static documentation rebuilt by pkgdownv0.9.49.9Johannes Ranke2-2/+5
2020-03-31Use inline documentation for R6 class mkindsJohannes Ranke6-99/+126
2020-03-31Static documentation rebuilt by pkgdownJohannes Ranke8-32/+57
2020-03-30Static documentation rebuilt by pkgdownJohannes Ranke25-219/+371
2020-03-30Don't check for gcc on the path in mkinmodJohannes Ranke17-143/+304
Roxygen update -> formatting changes in Rd files
2020-03-30Add new dependenciesJohannes Ranke2-59/+15
2020-03-30Fixed example codeJohannes Ranke2-11/+22
2020-03-30First nlme fits for models with a metaboliteJohannes Ranke19-123/+400
2020-03-29First automatic generation of an nlme modelJohannes Ranke2-58/+133
2020-03-27Merge branch 'master' into mxkinJohannes Ranke46-113/+1114
2020-03-18Clarify comment in example codeJohannes Ranke1-1/+1
2020-02-14Delete trailing whitespaceJohannes Ranke1-11/+11
2020-02-14Update local r-forge path in MakefileJohannes Ranke1-1/+1
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke9-20/+18
2020-01-08Todays date in DESCRIPTION, update check logv0.9.49.8Johannes Ranke2-2/+3
2020-01-08Typos in NEWS, update static docsJohannes Ranke2-2/+2
2019-12-16Argument ymax for plot.mmkinJohannes Ranke3-13/+25
2019-12-10More additions to the READMEJohannes Ranke3-5/+9
2019-12-10Update and amend the READMEJohannes Ranke3-7/+58
2019-12-09Consistently use "two-component error model"Johannes Ranke4-7/+7
instead of "two component error model"
2019-11-13Improve formatting using markdownJohannes Ranke3-21/+19
2019-11-13Improve READMEJohannes Ranke3-19/+12
2019-11-13Calculate Akaike weightsJohannes Ranke12-11/+361
2019-11-13Improve citationJohannes Ranke1-1/+2
2019-11-13Likelihood ratio test for mmkin columns with two fitsJohannes Ranke5-7/+15
2019-11-13Remove leftover lineJohannes Ranke1-2/+0
2019-11-12lrtest method for mmkin columns with two fitsJohannes Ranke1-0/+9
2019-11-09Add a lack-of-fit testJohannes Ranke20-27/+605
- Switch an example dataset in the test setup to a dataset with replicates, adapt tests - Skip the test for lrtest with an update specification as it does not only fail when pkgdown generates static help pages, but also in testthat
2019-11-06Attempt of an overall model for an mmkin rowJohannes Ranke1-0/+58

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