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2024-07-28Move coverage report from travis to github actionsJohannes Ranke6-4/+82
2024-07-28Make sure test work on my desktop, skip more tests on travisJohannes Ranke3-9/+11
2024-07-24Go back to the only version that worked onceRanke Johannes1-2/+2
2024-07-24Another attemptRanke Johannes1-1/+1
2024-07-24Try to fit in 50 minutes travis build timeRanke Johannes1-1/+1
2024-07-23And one moreRanke Johannes1-2/+2
2024-07-23And another try with travisRanke Johannes1-1/+1
2024-07-23Yet another go at travisRanke Johannes1-2/+2
2024-07-2330 minutes for coverage did not suffice for travisRanke Johannes1-1/+1
2024-07-23Go back to 30 minutes for coverageRanke Johannes1-1/+1
Apparently, the problem was the log silence timeout of 10 minutes on my repository, thankfully the travis support increased it to 30 minutes.
2024-07-23Another attempt to fix coverage on travisRanke Johannes1-1/+1
2024-07-23Try to convince travis to complete the coverage reportRanke Johannes1-1/+1
2024-07-22Update travis build status badgeRanke Johannes1-1/+1
2024-07-22Merge remote-tracking branch 'refs/remotes/origin/main'Ranke Johannes12-41/+80
2024-05-02Add empty spreadsheet for entering dataRanke Johannes1-0/+0
2024-04-27Fix bug in R/create_deg_func.RJohannes Ranke12-41/+80
Closes #13
2023-11-26Deal with 'saem' fits failing when updating an 'mhmkin' objectJohannes Ranke8-32/+68
2023-11-25Bump the date to trigger build on TravisJohannes Ranke1-1/+1
They refilled my credits, thanks for that!
2023-11-23Bump version, fix test from last commit, check and testJohannes Ranke6-136/+68
2023-11-23fix: 'R/illparms.R': An ill-defined random effect is now also found if there ↵Johannes Ranke3-5/+38
is only one random effect in the model. Also add a test for this.
2023-11-16Update pkgdown docs to bootstrap 5 with searchJohannes Ranke315-13204/+20683
2023-11-02Benchmarks on new CPU with current versionsJohannes Ranke5-4/+68
2023-10-30Update static docsRanke Johannes236-993/+1269
2023-10-30The UBA Report on the template is publishedRanke Johannes2-56/+91
Also, add a long overdue reference to previous work in population based modelling of degradation data.
2023-10-14Update static docs and build logv1.2.6Johannes Ranke9-30/+37
2023-10-13Update DESCRIPTION und NEWSJohannes Ranke2-4/+8
2023-10-09Fix an error in the templateJohannes Ranke2-1/+1
Thanks to Janina Wöltjen for pointing it out
2023-08-17Update tests without any openblas variantJohannes Ranke7-680/+731
This even a bit faster.
2023-08-17Update test log with libopenblas0-pthreadJohannes Ranke1-49/+15
2023-08-17Update platform specific tests on desktopJohannes Ranke7-696/+746
2023-08-17Point to the dmta pathway vignette in the dmta testJohannes Ranke1-2/+5
2023-08-10Add a link to the new vignette in online docsJohannes Ranke9-14/+36
2023-08-09Update static docsv1.2.5Johannes Ranke23-75/+2645
2023-08-09Go back to jammy on travisJohannes Ranke1-1/+1
As it passed all tests
2023-08-09Go back to focal, skip drat repo on travisRanke Johannes1-2/+1
2023-08-09Try jammy on travisRanke Johannes1-1/+1
2023-08-09Depend on saemix 3.2 to control test resultsRanke Johannes1-1/+1
2023-08-09Don't install saemix 3.2 from github any moreRanke Johannes4-19/+19
Emmanuelle has made an official release to CRAN in June
2023-08-08Update docs, check and test on RStudio serverRanke Johannes5-56/+49
2023-08-08Fix a logical error in the mesotrione vignetteRanke Johannes2-1/+1
2023-08-08RStudio project infrastructureRanke Johannes3-0/+25
2023-08-07TyposRanke Johannes1-2/+2
2023-08-04Mesotrione data and vignetteJohannes Ranke15-703/+1318
The vignette illustrates pH dependent degradation (covariate modelling) with some detail for the parent compound. Also, a bug in the saem method of the illparms function was fixed, which prevented to find ill-defined parameters in cases where e.g. slopes of covariate models have a negative estimate.
2023-05-19Prepare release of v1.2.4v1.2.4Johannes Ranke185-5978/+3258
- Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release
2023-05-08Fix obtaining endpoints for user defined covariate valuesJohannes Ranke2-3/+6
2023-04-20Update vignettes in dev docsJohannes Ranke31-260/+341
After the post-release fixes to the release version online docs
2023-04-20Switch docs back to devel modeJohannes Ranke1-2/+2
2023-04-20Merge branch 'v1.2.3_pkgdown'Johannes Ranke272-1788/+15228
2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke269-1784/+15174
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2023-04-20Small changes to the multistart vignetteJohannes Ranke1-16/+11
- Fix legend positions and y axis scaling - Include two more variants in the model comparison at the end, and fix the logic of the discussion

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