| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2015-06-19 | Use odeintr instead of ccSolve for compiling modelsodeintr | Johannes Ranke | 23 | -202/+256 | |
| 2015-06-05 | FOCUS D vignette generated from Makefile | Johannes Ranke | 1 | -83/+248 | |
| 2015-06-05 | News entry for new vignette FOCUS_D | Johannes Ranke | 1 | -0/+4 | |
| 2015-06-05 | Add a simple vignette with an evaluation of FOCUS D | Johannes Ranke | 3 | -1/+356 | |
| 2015-06-05 | Make the examples that are run more quiet | Johannes Ranke | 1 | -2/+2 | |
| 2015-05-19 | Typo in dummy file | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-19 | Forgot to commit the README source file | Johannes Ranke | 1 | -4/+4 | |
| 2015-05-19 | Avoid distracting output in README | Johannes Ranke | 1 | -144/+1 | |
| 2015-05-19 | Include output in README, use mkinsub() in example code | Johannes Ranke | 14 | -32/+435 | |
| 2015-05-19 | Code highlighting, use of mkinsub() in README.md | Johannes Ranke | 1 | -24/+30 | |
| 2015-05-19 | Make compiled models more prominent in feature list | Johannes Ranke | 1 | -3/+4 | |
| 2015-05-19 | Link to compiled_models vignette, advertise NEWS | Johannes Ranke | 1 | -1/+9 | |
| 2015-05-18 | Fix format of NEWS.md | Johannes Ranke | 1 | -7/+3 | |
| 2015-05-18 | Make checking faster, testing is done by tests | Johannes Ranke | 5 | -15/+12 | |
| 2015-05-15 | Merge branch 'master' into compile_odes | Johannes Ranke | 1 | -0/+1 | |
| 2015-05-15 | Reduce time to run mkinfit example | Johannes Ranke | 1 | -0/+2 | |
| 2015-05-15 | Bump version as 0.9-35 is on CRAN now | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Merge branch 'master' into compile_odes | Johannes Ranke | 2 | -7/+6 | |
| 2015-05-15 | Remove dead link to KinGUII pagev0.9-35 | Johannes Ranke | 1 | -6/+5 | |
| 2015-05-15 | Remove missing files from svn before commiting to r-forge | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Clean up meta information | Johannes Ranke | 2 | -4/+4 | |
| 2015-05-15 | Make mkinmod quiet in tests | Johannes Ranke | 7 | -13/+16 | |
| 2015-05-15 | Merge branch 'master' into compile_odes | Johannes Ranke | 19 | -431/+556 | |
| Conflicts (resolved manually, deleting code that I had integrated into the RUnit tests for testing the compiled version): .gitignore DESCRIPTION inst/unitTests/runit.mkinerrmin.R inst/unitTests/runit.mkinfit.R tests/testthat/test_mkinpredict_SFO_SFO.R vignettes/FOCUS_L.html | |||||
| 2015-05-15 | Update of vignettes during staticdoc documentation | Johannes Ranke | 3 | -61/+61 | |
| 2015-05-15 | Add synthetic data generated for UBA expertise, tests | Johannes Ranke | 5 | -1/+135 | |
| The new tests are based on the results documented in the expertise I wrote for the UBA (currently unpublished). | |||||
| 2015-05-15 | Quote FME package name in DESCRIPTION | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Relax test tolerance for SFORB, FOCUS B and deSolve | Johannes Ranke | 1 | -2/+2 | |
| While this was OK on my local windows machine, the test failed on winbuilder | |||||
| 2015-05-15 | Better description of the release procedure | Johannes Ranke | 1 | -2/+2 | |
| 2015-05-15 | Make FOMC test for FOCUS A robust towards non-convergence | Johannes Ranke | 1 | -5/+4 | |
| 2015-05-15 | Also migrate test for mkinpredict | Johannes Ranke | 1 | -28/+12 | |
| 2015-05-15 | Correct the date | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Skip testing FOMC with FOCUS A Windows | Johannes Ranke | 1 | -9/+15 | |
| Testing the package on winbuilder shows that the Port algorithm does not converge on Windows with this combination, which is not a problem as the FOMC model is not appropriate for the dataset anyways. | |||||
| 2015-05-15 | Finished migration from RUnit to testthat | Johannes Ranke | 9 | -316/+370 | |
| 2015-05-14 | Start of migration from RUnit to testthat | Johannes Ranke | 10 | -61/+58 | |
| 2015-04-18 | Add a vignette showing the performance of compiled models | Johannes Ranke | 10 | -15/+282 | |
| 2015-04-17 | Add NEWS about compiled models, set the date | Johannes Ranke | 2 | -1/+14 | |
| 2015-04-17 | Make compiled FOMC and DFOP models work | Johannes Ranke | 3 | -6/+37 | |
| - Many thanks @karlines for the hint in ccSolve#1 how to declare the time variable and for writing the ccSolve package in the first place - Add tests for the compiled versions of the FOMC and DFOP models | |||||
| 2015-04-16 | Add tests for default solution method, fix one test | Johannes Ranke | 1 | -3/+12 | |
| 2015-04-16 | Order of parameters needs to be right for compiled models | Johannes Ranke | 1 | -1/+1 | |
| 2015-04-16 | Test what I wanted to test | Johannes Ranke | 1 | -1/+1 | |
| 2015-04-16 | Update copyright header, improve documentation of solution_type | Johannes Ranke | 4 | -16/+22 | |
| 2015-04-16 | Check compiled mkinmod versions in examples and tests | Johannes Ranke | 5 | -7/+56 | |
| Tests all pass (Linux) | |||||
| 2015-04-16 | Merge branch 'compile_odes' | Johannes Ranke | 5 | -14/+57 | |
| 2015-04-16 | Correctly close braces of examples section | Johannes Ranke | 1 | -0/+1 | |
| 2015-04-16 | Pending commit of an updated vignette | Johannes Ranke | 1 | -77/+76 | |
| 2015-04-14 | Compile differential equation models with ccSolve package | Johannes Ranke | 5 | -14/+56 | |
| If the ccSolve package is available, and time is not in the right hand side of the equations (i.e. if only SFO and SFORB models are used), the differential equation model is compiled from auto-generated C code. Currently, one test (FOCUS 2006 D SFO_SFO) fails | |||||
| 2015-02-21 | Avoid NOTES in R CMD check | Johannes Ranke | 3 | -1/+6 | |
| - Export S3 methods - Avoid using undeclared variable names | |||||
| 2015-02-20 | Add termination message to mkinfit, prepare release | Johannes Ranke | 3 | -2/+14 | |
| 2015-02-20 | Fix printing the summary if iterations are not available | Johannes Ranke | 3 | -1/+6 | |
| This was broken for using method.modFit = "SANN" | |||||
| 2014-12-18 | Updated vignettes during staticdoc generation | Johannes Ranke | 3 | -30/+30 | |
 |
index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
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