Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2020-10-26 | Put the legend in its own area for plot.nlme.mmkin | Johannes Ranke | 21 | -115/+121 | |
2020-10-26 | Fix another bug in plot.nlme.mmkin | Johannes Ranke | 1 | -1/+2 | |
2020-10-26 | Fix a bug in plot.nlme.mmkin | Johannes Ranke | 1 | -1/+3 | |
2020-10-24 | Fix a bug for nlme with parent only, improve examples | Johannes Ranke | 13 | -150/+32 | |
2020-10-24 | Improve plot layout | Johannes Ranke | 6 | -61/+23 | |
2020-10-24 | Plot method for nlme.mmkin objects | Johannes Ranke | 20 | -189/+624 | |
Update docs | |||||
2020-10-24 | Printing method for mmkin objects | Johannes Ranke | 3 | -8/+53 | |
2020-10-22 | Really fix check for nlme::varConstProp | Johannes Ranke | 4 | -6/+53 | |
And add output for nlme fit translating the mkinfit error model "obs" into nlme::varIdent(). | |||||
2020-10-22 | Fix check for nlme::varConstProp | Johannes Ranke | 2 | -1/+1 | |
2020-10-22 | Try 2 to make travis use nlme from my drat repo | Johannes Ranke | 1 | -1/+3 | |
2020-10-22 | Update pkgdown docs | Johannes Ranke | 22 | -113/+201 | |
2020-10-22 | Improve interface to experimental version of nlme | Johannes Ranke | 9 | -24/+158 | |
The experimental nlme version in my drat repository contains the variance function structure varConstProp which makes it possible to use the two-component error model in generalized nonlinear models using nlme::gnls() and in mixed effects models using nlme::nlme(). | |||||
2020-10-15 | More gentle example for saemix with combined error model | Johannes Ranke | 11 | -49/+47 | |
2020-10-15 | Get current nlme version from CRAN on Travis | Johannes Ranke | 3 | -3/+6 | |
Also commit the dontrun instruction for saemix I had wanted to commit and switch back to devel mode for pkgdown | |||||
2020-10-15 | Don't run saemix examples on travis for now | Johannes Ranke | 1 | -1/+2 | |
2020-10-15 | Update online docs for release version | Johannes Ranke | 142 | -2297/+2727 | |
2020-10-15 | Updating docs of current dev version | Johannes Ranke | 36 | -156/+522 | |
2020-10-15 | Use my saemix repo for travis | Johannes Ranke | 1 | -1/+1 | |
The official repo is not installable at the moment | |||||
2020-10-15 | Reintroduce saemix helper functions | Johannes Ranke | 10 | -47/+273 | |
2020-10-08 | saemix dev version is not installable at the moment | Johannes Ranke | 1 | -2/+0 | |
2020-10-08 | Fix another URL, add devcheck targetv0.9.50.3 | Johannes Ranke | 11 | -11/+85 | |
2020-10-08 | Fix issues for release | Johannes Ranke | 92 | -1670/+1285 | |
2020-10-08 | Avoid dep on dev version of saemix for release | Johannes Ranke | 3 | -139/+3 | |
2020-09-10 | Regenerate docs with current roxygen | Johannes Ranke | 3 | -4/+6 | |
2020-09-01 | Merge branch 'master' of kolab.jrwb.de:mkin | Johannes Ranke | 3 | -31/+1 | |
2020-09-01 | Back-calculated DT50 values for biphasic models | Johannes Ranke | 2 | -1/+12 | |
2020-07-20 | Require upcoming nlme version, remove anova.nlme.mmkin | Johannes Ranke | 3 | -31/+1 | |
The method is no longer necessary, now that Bug 17761 is fixed upstream https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 | |||||
2020-07-17 | mkinfit: Ignore unused components of state.ini | Johannes Ranke | 5 | -6/+20 | |
2020-07-15 | Bump date to trigger Travis build after clearing cache | Johannes Ranke | 1 | -1/+1 | |
2020-07-15 | Merge branch 'master' of kolab.jrwb.de:mkin | Johannes Ranke | 0 | -0/+0 | |
2020-07-15 | Improve tests | Johannes Ranke | 5 | -49/+90 | |
- Reduce significant digits for the objective function output in mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis | |||||
2020-07-15 | Improve tests | Johannes Ranke | 5 | -49/+90 | |
- Reduce significant digits for mkinfit(..., quiet = TRUE) as R and R-devel were different on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis | |||||
2020-07-15 | Improve handling of (partially) failing fits | Johannes Ranke | 6 | -31/+48 | |
2020-07-15 | Use try() within mmkin | Johannes Ranke | 1 | -1/+1 | |
This keeps mmkin from stopping if one of the fits fails. Instead, a try-error is assigned to the respective position in the mmkin object. | |||||
2020-06-15 | vdiffr dev version not really necessary | Johannes Ranke | 1 | -1/+0 | |
2020-06-15 | Test plots on r-devel only | Johannes Ranke | 21 | -237/+252 | |
following the arguments of Xavier Robin https://github.com/r-lib/vdiffr/issues/86#issuecomment-636447231 | |||||
2020-06-15 | Use current devel version of vdiffr on Travis | Johannes Ranke | 1 | -1/+3 | |
2020-06-15 | Fix a bug, update for current vdiffr | Johannes Ranke | 7 | -118/+17 | |
Vignette FOCUS_L failed as I had introduced a bug in the handling of warnings. Current vdiffr only runs visual tests if R < 4.1.0, skipping r-devel for now, see https://github.com/r-lib/vdiffr/commit/630a29d013361fd63fea242f531e2db6aef37919 | |||||
2020-05-29 | Improve handling of warnings, reorganize tests | Johannes Ranke | 14 | -166/+354 | |
2020-05-29 | Warn if standardized residuals are unlikely normal | Johannes Ranke | 14 | -152/+131 | |
This revealed a bug in the data returned in mkinfit$data in the case of the d_3 algorithm, which also affected the residual plot - the data from the direct fitting was not returned even if this was the better method. | |||||
2020-05-28 | use_of_ff = "max" for shorthand models like "SFO" | Johannes Ranke | 9 | -33/+35 | |
2020-05-27 | Improve mkinmod docs | Johannes Ranke | 4 | -85/+135 | |
2020-05-27 | Change dev version label to info color | Johannes Ranke | 26 | -94/+95 | |
instead of the orange danger color. | |||||
2020-05-27 | Advertise docs of the dev version | Johannes Ranke | 2 | -13/+14 | |
2020-05-27 | Add docs generated using released version 0.9.52 | Johannes Ranke | 63 | -1348/+660 | |
2020-05-27 | Create up to date pkgdown docs in development mode | Johannes Ranke | 187 | -1/+24660 | |
2020-05-26 | Use all cores per default, confint tolerance | Johannes Ranke | 29 | -405/+466 | |
Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits. | |||||
2020-05-26 | Use upstream saemix for travis | Johannes Ranke | 1 | -1/+1 | |
The necessary change has been merged | |||||
2020-05-25 | Tell travis where to really find the saemix version... | Johannes Ranke | 1 | -1/+1 | |
2020-05-25 | Tell travis where to find the required saemix version | Johannes Ranke | 5 | -14/+14 | |