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2014-04-30Overhaul of gmkin - should be useful nowJohannes Ranke1-59/+161
- Improve widget layout + Size of widgets in left pane + Enable scrolling in left pane + Smaller plot + Control width of summary text file - Upload of data with flexible format - Parameter transformation is now optional - Get initial values from selected previous fit - Fix initial plots for the case of zero parameter values
2014-04-30Update of FOCUS 2006 Z workspace with current mkinfitJohannes Ranke1-0/+0
2014-04-30Fix of bug introduced with t-testJohannes Ranke1-1/+1
2014-04-30Restore t-test (1- and 2-sided) for fitted parametersJohannes Ranke1-3/+6
2014-04-29Reformat McCall data to have one Rd file per objectJohannes Ranke4-35/+42
2014-04-29Restore graphics parameters after plotting with residualsJohannes Ranke1-0/+2
2014-04-29Fix y label in optional residual plot of plot.mkinfitJohannes Ranke1-1/+1
2014-04-28Revert to percent sign "%" in FOCUS 2006 dataJohannes Ranke1-0/+0
2014-04-28Fix version, write ChangeLogJohannes Ranke2-1/+12
2014-04-28Fix the name of the R objectJohannes Ranke1-0/+0
2014-04-28Adapt the documentation for the HS modelJohannes Ranke1-1/+2
2014-04-28Fix a bug recently introduced to the Hockey stick modelJohannes Ranke1-3/+3
2014-04-28Bump versionJohannes Ranke1-2/+2
2014-04-28Option to add residual plot to plot.mkinfitJohannes Ranke5-31/+62
2014-04-28Avoid percent sign and add a fit to avoid errorsJohannes Ranke1-0/+0
2014-04-28Fix uploading of workspace filesJohannes Ranke1-0/+3
2014-04-28Remove unused RSVGTipsDevice from suggested packagesJohannes Ranke1-1/+1
2014-04-28Complete the introduction of plot optionsJohannes Ranke1-24/+27
2014-04-26Fix the default case for obs_vars in plot.mkinfit()Johannes Ranke2-13/+8
2014-04-26New layout for plotting and fitting, add residual plotJohannes Ranke1-122/+92
2014-04-26Enable selection of observed variables to plotJohannes Ranke2-22/+31
2014-04-25McCall 2,4,5-T dataset, lower bound for transform_rates=FALSEJohannes Ranke7-6/+52
2014-04-22Possibility to fit without parameter transformationJohannes Ranke6-35/+98
2014-03-24Source of gWidgetsWWW2 package to comply with CRAN policyJohannes Ranke1-1/+3
2014-03-21Small variation to last commit, in reality fixes #2Johannes Ranke1-1/+1
2014-03-21Update interval variabel list on saving a dataset, fixes #1Johannes Ranke1-0/+1
2014-03-21Fix markup of mkin acronym explanation (hopefully)Johannes Ranke1-4/+4
2014-03-20Add copyright information and bugreport URLJohannes Ranke1-3/+5
2014-02-28Include ideas about extJS into TODOJohannes Ranke1-0/+2
2014-02-27Format of gmkin workspace files, copyright, updatesJohannes Ranke11-39/+133
- Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup
2014-01-22Merge branch 'master' of https://github.com/jranke/mkinJohannes Ranke9-34/+61
Conflicts: DESCRIPTION R/mkinfit.R
2014-01-17- Use mkinmod$spec instead of mkinmod$map wherever possible, in order to ↵Johannes Ranke2-5/+5
make it possible to to modify mkinmod$map when the mapping of internal to observed variables should be changed. Note that such modifications will confuse plot.mkinfit and summary.mkinfit. Setting the class attribute to modFit makes summary.modFit useable in such a case
2013-12-04Make it possible to use different ode solvers=5-16/+47
2013-12-04Update ChangeLog and DESCRIPTIONJohannes Ranke2-3/+6
2013-12-04Make clear in help file that gmkin is experimentalJohannes Ranke1-0/+3
2013-12-04Add Makefile targets without vignette buildingJohannes Ranke1-8/+9
2013-12-04Remove mkinmod warning based on a misconceptionJohannes Ranke1-13/+2
2013-11-18Add GUI start function, keep GUI here in mkinJohannes Ranke7-8/+38
2013-11-17Merge branch 'r-forge'Johannes Ranke0-0/+0
2013-11-17Squashed commit of the following:jranke1-2/+0
commit f865119e13ac52d59d4a9850bff3804baeb887a7 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Sun Nov 17 21:11:08 2013 +0100 Update of the TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@165 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Update of the TODOJohannes Ranke1-2/+0
2013-11-17Merge branch 'master' into r-forgejranke2-7/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@164 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Conflicts:jranke39-724/+1599
README.md TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@163 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Change vignette format to knitr (see ChangeLog)Johannes Ranke39-727/+1595
2013-11-13Squashed commit of the following:jranke4-11/+56
commit d8dbf2ad866fb9d34cd1100000b9c116219ecef6 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 22:09:41 2013 +0100 Add possibility to control more mkinfit arguments from the GUI commit 8f1bae2142b37a0ff6b8989b2d1569686937f68e Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 20:30:11 2013 +0100 Add initial weighting choice to GUI commit c99b5c298713a7c14e8ab5604c68613d0b7af27a Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 16:25:31 2013 +0100 Update of TODO from git bash on Windows commit 8bf2a6f8f6bd752433f06b26b5da334e958f5166 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 16:00:01 2013 +0100 Update of README using TortoiseGit git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@162 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-13Add possibility to control more mkinfit arguments from the GUIJohannes Ranke2-7/+40
2013-11-13Add initial weighting choice to GUIJohannes Ranke1-3/+16
2013-11-13Update of TODO from git bash on WindowsJohannes Ranke1-2/+2
2013-11-13Update of README using TortoiseGitJohannes Ranke1-5/+4
2013-11-12Merge branch 'master' into r-forgejranke1-0/+7
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@161 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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