| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2014-11-12 | Update the FOCUS_Z vignette for default "Port" algorithm | Johannes Ranke | 2 | -11/+4 | |
| 2014-11-12 | Fix for IORE in mkinmod | Johannes Ranke | 2 | -4/+9 | |
| 2014-11-12 | Merge branch 'master' of https://github.com/jranke/mkin into iore | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-12 | IORE working for parent and metabolites, introduce mkinsub | Johannes Ranke | 6 | -4/+84 | |
| 2014-11-12 | Fix the typo in the help page, too | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-12 | Merge branch 'master' into iore | Johannes Ranke | 23 | -506/+798 | |
| 2014-11-12 | Fix a typo in the list of possible arguments | Johannes Ranke | 1 | -1/+1 | |
| Thanks to Michael Brauer for the hint | |||||
| 2014-10-29 | Correct name of the DFOP model according to FOCUS kinetics | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-23 | Update to README | Johannes Ranke | 1 | -2/+2 | |
| 2014-10-22 | Always include 0 on y axis when plotting during the fit | Johannes Ranke | 3 | -2/+4 | |
| 2014-10-15 | Switch to using the Port algorithm per default | Johannes Ranke | 7 | -81/+95 | |
| 2014-10-14 | Further formatting improvement for differential equations | Johannes Ranke | 5 | -47/+57 | |
| 2014-10-14 | Add a comment about transforming fractions | Johannes Ranke | 1 | -4/+10 | |
| 2014-10-14 | Some cosmetics | Johannes Ranke | 1 | -4/+4 | |
| 2014-10-14 | Link the the new gmkin homepage | Johannes Ranke | 1 | -4/+3 | |
| 2014-10-12 | Use title case for the title | Johannes Ranke | 1 | -2/+2 | |
| Tried to adhere to the Chicago Manual of Style, but am not sure about "with". | |||||
| 2014-10-11 | Start new development version | Johannes Ranke | 2 | -1/+3 | |
| 2014-10-11 | Updated vignettes by building static documentation | Johannes Ranke | 3 | -97/+111 | |
| 2014-10-11 | Updates intended for releasing mkin 0.9-33 | Johannes Ranke | 2 | -1/+3 | |
| 2014-10-06 | Avoid a warning produced by initial fits in gmkin | Johannes Ranke | 2 | -8/+11 | |
| 2014-08-30 | Change to https to avoid messages about leaving secured grounds | Johannes Ranke | 1 | -1/+1 | |
| 2014-08-30 | Correct the link to KinGUII | Johannes Ranke | 1 | -1/+1 | |
| 2014-08-30 | Add a link to the KinGUII website | Johannes Ranke | 1 | -1/+2 | |
| 2014-08-29 | Avoid an unnecessary warning | Johannes Ranke | 2 | -5/+5 | |
| 2014-08-25 | Bug fix and unit tests for mkinerrmin | Johannes Ranke | 9 | -98/+146 | |
| See NEWS.md for details | |||||
| 2014-08-25 | Remove intermediate vignette files when cleaning | Johannes Ranke | 1 | -0/+1 | |
| 2014-08-20 | Fix mkinfit for a special situation | Johannes Ranke | 3 | -8/+10 | |
| See NEWS.md: When the parent was not the (only) variable with the highest value out of all variables in the observed data, it could happen that the initial value (state.ini) was not initialised. | |||||
| 2014-08-20 | Update NEWS with change from yesterday | Johannes Ranke | 1 | -0/+6 | |
| 2014-08-19 | Small reformulations | Johannes Ranke | 1 | -6/+5 | |
| 2014-08-19 | Improve formatting of differential equations in output | Johannes Ranke | 5 | -4/+5 | |
| Rebuild of FOCUS_Z vignette with improved formatting | |||||
| 2014-08-02 | More to do, gathered during the software validation checks | Johannes Ranke | 1 | -0/+2 | |
| 2014-07-31 | More to do, gathered during the software validation checks | Johannes Ranke | 1 | -0/+5 | |
| 2014-07-25 | Fix internal naming of g for transform_fractions=FALSE | Johannes Ranke | 3 | -3/+18 | |
| 2014-07-24 | Improve formulation | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-24 | Semantic correction in help file | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-24 | Bump version, better default for state.ini | Johannes Ranke | 4 | -3/+16 | |
| 2014-07-24 | Update vignettes with 0.9-32 just released to CRAN | Johannes Ranke | 3 | -39/+33 | |
| 2014-07-24 | Avoid artificial zero residual in mkinresplot | Johannes Ranke | 3 | -2/+5 | |
| 2014-07-23 | Parallel metabolite formation with formation fractions in mkinerrmin | Johannes Ranke | 4 | -4/+10 | |
| 2014-07-22 | Formatting TODO | Johannes Ranke | 1 | -0/+1 | |
| 2014-07-21 | Ignore vignette build timestamp | Johannes Ranke | 1 | -0/+1 | |
| 2014-07-21 | Residual plots are important | Johannes Ranke | 1 | -0/+1 | |
| 2014-07-21 | Simplify usage examples | Johannes Ranke | 1 | -17/+16 | |
| 2014-07-21 | Bugfix, model shorthand, state.ini[[1]] from observed data | Johannes Ranke | 11 | -231/+279 | |
| - The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes | |||||
| 2014-07-17 | Return complete list of initial states after fitting | Johannes Ranke | 1 | -1/+4 | |
| This is useful for specifying state.ini in a subsequent call to mkinfit | |||||
| 2014-07-17 | Handle non-convergence and maximum number of iterations | Johannes Ranke | 7 | -95/+190 | |
| For details see NEWS.md | |||||
| 2014-07-16 | Merge branch 'master' into iore | Johannes Ranke | 3 | -3/+34 | |
| 2014-07-16 | Insert empty lines to have R make separate entries | Johannes Ranke | 1 | -0/+30 | |
| 2014-07-14 | Small improvements to usage examples | Johannes Ranke | 1 | -2/+3 | |
| 2014-07-14 | Vignettes as just synced to the static documentation on r-forge | Johannes Ranke | 3 | -27/+21 | |
 |
index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
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