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2020-05-08Analytical SFO_SFO about as fast as deSolve compiledJohannes Ranke2-19/+52
2020-05-07Don't use binary version of covrJohannes Ranke1-2/+0
in an attempt to circumvent outdated apt repositories for r-api-35
2020-05-07Another overhaul of analytical solutionsJohannes Ranke45-390/+626
Still in preparation for analytical solutions of coupled models
2020-05-07Merge parent solutions to one fileJohannes Ranke10-9/+62
- Combine R/*.solution.R into R/parent_solutions.R - Create a roxygen family of related functions - Reduce redundancy by using the inherit tag - Change the parent.0 argument to parent_0 to match the corresponding parameter name used in mkinfit
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke40-1032/+1531
2020-05-06Change implementation of analytical solutionsJohannes Ranke12-226/+248
Preparing for symbolic solutions for more than one compound
2020-05-06Formatting, README update, color palette of R 4.xJohannes Ranke7-347/+347
2020-05-06Remove redundant commentsJohannes Ranke1-7/+0
2020-04-22Support SFORB with formation fractionsJohannes Ranke9-51/+59
2020-04-22Remove GPL header from test filesJohannes Ranke19-329/+3
2020-04-20Updated build and check logsv0.9.49.11Johannes Ranke2-2/+2
2020-04-20Prepare release to address failed CRAN checkJohannes Ranke10-37/+42
2020-04-20Increase test tolerance for residualsJohannes Ranke4-7/+9
This was done to address the test failure on r-devel-linux-x86_64-debian-gcc on CRAN
2020-04-18Fix NOTE, prepare for releasev0.9.49.10Johannes Ranke5-27/+8
2020-04-18Avoid assignment to .GlobalEnv for CRANJohannes Ranke16-56/+271
2020-04-17Advertise nlme related functionalityJohannes Ranke2-0/+4
2020-04-17Fix summarizing old objectsJohannes Ranke3-14/+22
2020-04-17News entry, static documentation rebuilt by pkgdownJohannes Ranke2-0/+3
2020-04-17Add AIC, BIC and log likelihood to summary.mkinfitJohannes Ranke4-0/+22
2020-04-16Test the new endpoint function on nlme.mmkinJohannes Ranke1-0/+3
2020-04-16Increase test coverageJohannes Ranke3-12/+37
2020-04-16mean_degparms: Fix rownames in random effectsJohannes Ranke1-1/+1
2020-04-15Adapt endpoint() to also work for nlme.mmkin objectsJohannes Ranke8-22/+101
2020-04-15Include random effects in starting parametersJohannes Ranke25-236/+420
- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-15Show fit information even if show_errmin = FALSEJohannes Ranke1-4/+5
2020-04-15A plot method for nlme.mmkin fitsJohannes Ranke16-118/+800
2020-04-14Add a nlme method for mmkin row objectsJohannes Ranke6-23/+270
2020-04-14Keep order of datasets in nlme_data, add a plotJohannes Ranke5-6/+51
2020-04-10Address build config validation hintsJohannes Ranke1-2/+4
2020-04-10Improve nlme function docsJohannes Ranke15-75/+162
2020-04-10Trigger rebuild after deleting caches on travisJohannes Ranke1-1/+1
According to the hint of @jimhester received in the Travis Forum - thanks!
2020-04-09Add another visual test for coverageJohannes Ranke3-17/+151
2020-04-09Travis: Reduce another test toleranceJohannes Ranke1-1/+2
2020-04-09Tests on Travis: Residuals tolerance and skip another plotJohannes Ranke2-4/+4
2020-04-09Improve test coverage and fix nlme testJohannes Ranke7-21/+370
No idea why I had to do more assignments all of a sudden in test_nlme.R
2020-04-09Try mkinerrplot for obs and tc on Travis againJohannes Ranke2-1/+59
2020-04-08Use two assignments to avoid skipping another testJohannes Ranke2-16/+16
2020-04-08Make the nlme test file work with testthatJohannes Ranke3-22/+16
2020-04-07Add some tests for the nlme convenience functionsJohannes Ranke6-15/+89
2020-04-07Improve documentation of mmkin objectsJohannes Ranke1-2/+3
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke7-11/+222
2020-04-04Add three functions to facilitate the use of nlmeJohannes Ranke11-508/+368
2020-04-03Merge branch 'master' into mxkinJohannes Ranke47-701/+1328
Merge DESCRIPTION manually to combine dependencies and rerun check to update check.log
2020-04-03Compiled models article, reduce distractionsJohannes Ranke16-351/+674
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2020-03-31Update NEWS, static documentation rebuilt by pkgdownv0.9.49.9Johannes Ranke2-2/+5
2020-03-31Use inline documentation for R6 class mkindsJohannes Ranke6-99/+126
2020-03-31Static documentation rebuilt by pkgdownJohannes Ranke8-32/+57
2020-03-30Static documentation rebuilt by pkgdownJohannes Ranke25-219/+371
2020-03-30Don't check for gcc on the path in mkinmodJohannes Ranke17-143/+304
Roxygen update -> formatting changes in Rd files
2020-03-30Add new dependenciesJohannes Ranke2-59/+15

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