Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2019-04-10 | Adapt tests, vignettes and examples | Johannes Ranke | 139 | -2333/+6813 | |
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit | |||||
2019-04-08 | Remove zero observations, adapt logLik | Johannes Ranke | 2 | -24/+11 | |
Zero observations at time zero made fitting the two-component error model fail. A concentration of exactly zero does not make sense anyways, as we generally have a limit of detection | |||||
2019-04-05 | Report negative log-likelihood during fits | Johannes Ranke | 1 | -4/+10 | |
If not quiet = TRUE | |||||
2019-04-04 | Direct error model fitting works | Johannes Ranke | 10 | -666/+1876 | |
- No IRLS required - Removed optimization algorithms other than Port - Removed the dependency on FME - Fitting the error model 'obs' is much faster for the FOCUS_2006_D dataset and the FOMC_SFO model (1 second versus 3.4 seconds) - Vignettes build slower. Compiled models needs 3 minutes instead of 1.5 - For other vignettes, the trend is less clear. Some fits are faster, even for error_model = "const". FOCUS_Z is faster (34.9 s versus 44.1 s) - Standard errors and confidence intervals are slightly smaller - Removed code for plotting during the fit, as I hardly ever used it - Merged the two cost functions (using transformed and untransformed parameters) into one log-likelihood function | |||||
2019-03-19 | Set URL to documentation page | Johannes Ranke | 1 | -1/+1 | |
2019-03-04 | Update README.html for cgit.jrwb.de | Johannes Ranke | 1 | -1/+1 | |
2019-03-04 | Make some example output more reproducible | Johannes Ranke | 17 | -914/+177 | |
In order to avoid some unnecessary documentation rebuilds | |||||
2019-03-04 | Fix .Rbuildignore | Johannes Ranke | 1 | -14/+13 | |
thanks to Kurt Hornik for pointing out that perl regexp syntax is needed, not shell glob syntax | |||||
2019-03-04 | Winbuilder also needs cores = 1v0.9.48.1 | Johannes Ranke | 1 | -1/+1 | |
2019-03-04 | signif for DTx when printing nafta results | Johannes Ranke | 3 | -5/+5 | |
In order to be able to test cross-platform | |||||
2019-03-04 | Review tests and examples based on winbuilder results | Johannes Ranke | 38 | -668/+715 | |
Static documentation rebuilt by pkgdown | |||||
2019-02-28 | Update README for cgit.jrwb.de | Johannes Ranke | 1 | -1/+1 | |
2019-02-27 | Fix test for mkinds printing | Johannes Ranke | 2 | -1/+7 | |
2019-02-27 | Comment out unused code | Johannes Ranke | 2 | -27/+27 | |
2019-02-27 | Further increase test coverage | Johannes Ranke | 7 | -11/+125 | |
2019-02-27 | Increase test coverage | Johannes Ranke | 8 | -39/+413 | |
2019-02-27 | Fix CAKE export test to actually work | Johannes Ranke | 7 | -7/+18 | |
Also test the model specification via the link argument | |||||
2019-02-26 | Static documentation rebuilt by pkgdown | Johannes Ranke | 61 | -80/+264 | |
2019-02-26 | NAFTA SOP Attachment vignette | Johannes Ranke | 57 | -156/+1616 | |
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0 | |||||
2019-02-26 | Static documentation rebuilt by pkgdown | Johannes Ranke | 19 | -88/+349 | |
2019-02-26 | Add another NAFTA dataset + test | Johannes Ranke | 14 | -53/+647 | |
2019-02-25 | Fixes for last commit | Johannes Ranke | 2 | -1/+3 | |
2019-02-25 | Test AIC calculation | Johannes Ranke | 2 | -1/+2 | |
2019-02-25 | Test CAKE export | Johannes Ranke | 7 | -78/+129 | |
2019-02-25 | Basic test for two-component reweighting | Johannes Ranke | 2 | -9/+13 | |
2019-02-25 | Test fitting without internal transformations | Johannes Ranke | 1 | -14/+34 | |
2019-02-25 | Shorten path to test plot | Johannes Ranke | 4 | -14/+11 | |
2019-02-25 | Fix tests and add plot and print for nafta | Johannes Ranke | 7 | -11/+505 | |
2019-02-25 | Test printing the summary of an mkinfit object | Johannes Ranke | 3 | -2/+157 | |
2019-02-25 | Another test case for plotting | Johannes Ranke | 2 | -1/+144 | |
2019-02-25 | Static documentation rebuilt by current pkgdown | Johannes Ranke | 62 | -149/+165 | |
2019-02-25 | Add plotting tests, add nafta to pkgdown | Johannes Ranke | 22 | -108/+1002 | |
2019-02-22 | Implement the NAFTA evaluation scheme | Johannes Ranke | 27 | -94/+1207 | |
2019-02-22 | Adapt test to the extended endpoints function | Johannes Ranke | 1 | -2/+2 | |
2019-02-22 | Static documentation rebuilt by pkgdown | Johannes Ranke | 15 | -91/+92 | |
2019-02-22 | Further adaptations for the logistic model | Johannes Ranke | 4 | -7/+13 | |
- Make mmkin compatible - Return DT50 values corresponding to k0 and kmax - Turn incompatible parameter names in parms.ini from an error to a warning, in order to make it possible to use this argument in calls to mmkin | |||||
2019-02-21 | Static documentation rebuilt by pkgdown | Johannes Ranke | 12 | -81/+82 | |
to get the codecov badge into the docs | |||||
2019-02-21 | Use codecov | Johannes Ranke | 4 | -2/+7 | |
2019-02-21 | Static documentation rebuilt by pkgdown | Johannes Ranke | 55 | -161/+160 | |
2019-02-21 | Remove unused code | Johannes Ranke | 3 | -3/+1 | |
2019-02-21 | Sync version number in DESCRIPTION with NEWS.md | Johannes Ranke | 1 | -2/+2 | |
2019-02-21 | Make example logistic fit quiet | Johannes Ranke | 13 | -131/+85 | |
2019-02-21 | Add the logistic model | Johannes Ranke | 31 | -215/+653 | |
2019-01-31 | Skipping with skip() needs a message | Johannes Ranke | 1 | -1/+1 | |
2019-01-31 | Skip tests for irls methd tc because it is not robust enough | Johannes Ranke | 1 | -1/+3 | |
2019-01-31 | Relax yet another test | Johannes Ranke | 1 | -1/+1 | |
2019-01-31 | Restore NAMESPACE | Johannes Ranke | 40 | -231/+2710 | |
which was accidentally overwritten by pkgdown -> roxygen | |||||
2019-01-31 | Suggest rmarkdown for vignette building on Travis | Johannes Ranke | 1 | -1/+1 | |
2019-01-31 | Relax another test for Travis | Johannes Ranke | 1 | -1/+1 | |
2019-01-31 | Correct title for CAKE_export | Johannes Ranke | 9 | -36/+39 | |
Add NEWS entry. Static documentation rebuilt by pkgdown |