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2014-08-20Update NEWS with change from yesterdayJohannes Ranke1-0/+6
2014-08-19Small reformulationsJohannes Ranke1-6/+5
2014-08-19Improve formatting of differential equations in outputJohannes Ranke5-4/+5
Rebuild of FOCUS_Z vignette with improved formatting
2014-08-02More to do, gathered during the software validation checksJohannes Ranke1-0/+2
2014-07-31More to do, gathered during the software validation checksJohannes Ranke1-0/+5
2014-07-25Fix internal naming of g for transform_fractions=FALSEJohannes Ranke3-3/+18
2014-07-24Improve formulationJohannes Ranke1-1/+1
2014-07-24Semantic correction in help fileJohannes Ranke1-1/+1
2014-07-24Bump version, better default for state.iniJohannes Ranke4-3/+16
2014-07-24Update vignettes with 0.9-32 just released to CRANJohannes Ranke3-39/+33
2014-07-24Avoid artificial zero residual in mkinresplotJohannes Ranke3-2/+5
2014-07-23Parallel metabolite formation with formation fractions in mkinerrminJohannes Ranke4-4/+10
2014-07-22Formatting TODOJohannes Ranke1-0/+1
2014-07-21Ignore vignette build timestampJohannes Ranke1-0/+1
2014-07-21Residual plots are importantJohannes Ranke1-0/+1
2014-07-21Simplify usage examplesJohannes Ranke1-17/+16
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke11-231/+279
- The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes
2014-07-17Return complete list of initial states after fittingJohannes Ranke1-1/+4
This is useful for specifying state.ini in a subsequent call to mkinfit
2014-07-17Handle non-convergence and maximum number of iterationsJohannes Ranke7-95/+190
For details see NEWS.md
2014-07-16Insert empty lines to have R make separate entriesJohannes Ranke1-0/+30
2014-07-14Small improvements to usage examplesJohannes Ranke1-2/+3
2014-07-14Vignettes as just synced to the static documentation on r-forgeJohannes Ranke3-27/+21
2014-07-14Fix syncinc with r-forgeJohannes Ranke1-1/+1
2014-07-14Bump version as 0.9-31 was released todayJohannes Ranke1-1/+1
2014-07-14Bugfix release version 0.9-31Johannes Ranke8-30/+1136
2014-07-11It is B. Mikolasch, not M. Mikolasch...Johannes Ranke2-2/+2
2014-07-11Update of syncing to r-forge without git-svnJohannes Ranke1-15/+12
2014-07-11Update the dateJohannes Ranke1-1/+1
2014-07-11Improve formatting in FOCUS_L vignette, rebuild vignettesJohannes Ranke28-0/+5
2014-07-07Coefficient matrix for formation fractions, no sink and one pathwayJohannes Ranke1-22/+26
2014-07-03Add a more complex usage exampleJohannes Ranke1-1/+17
2014-07-02Update of vignettesJohannes Ranke16-0/+0
2014-07-02Do not introduce formation fractions for singular pathwaysJohannes Ranke2-27/+29
- As a consequence, we do not need implicit formation fractions in mkinfit
2014-07-02Warning -> message, and only if initial parameter was not 1Johannes Ranke1-2/+4
2014-07-02Set implicit formation fraction to 1 even if set otherwise in parms.iniJohannes Ranke1-6/+8
2014-07-02Internal parameter transformations are optionalJohannes Ranke1-2/+2
2014-07-02Update vignettes - working flawlessly now!Johannes Ranke16-0/+0
2014-07-02Move handling of implicitly fixed formation fractions to mkinfitJohannes Ranke2-19/+11
2014-07-02TypoJohannes Ranke1-1/+1
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke12-197/+317
2014-07-01One more source code commentJohannes Ranke1-0/+2
2014-07-01One more check, update source code commentJohannes Ranke1-2/+3
2014-06-30Link to the gmkin page on githubJohannes Ranke1-1/+1
2014-06-30Put the hint to the github commit log to the endJohannes Ranke1-2/+4
2014-06-30Format the NEWS file in markdown, add Makefile targetJohannes Ranke5-132/+74
2014-06-28Rename ChangeLog to NEWS, new entry style, Makefile updateJohannes Ranke2-1/+16
2014-06-27Reorder endpoints in R/endpoints.R, update vignettesJohannes Ranke18-3/+3
2014-06-27Comment using the additional DT50 values at least onceJohannes Ranke1-2/+8
2014-06-27Reorganize the summary in a more logical orderJohannes Ranke1-19/+19
2014-06-27Add vignettes target, reorganizeJohannes Ranke1-17/+23

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