mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2014-07-24	Bump version, better default for state.ini	Johannes Ranke	4	-3/+16

2014-07-24	Update vignettes with 0.9-32 just released to CRAN	Johannes Ranke	3	-39/+33

2014-07-24	Avoid artificial zero residual in mkinresplot	Johannes Ranke	3	-2/+5

2014-07-23	Parallel metabolite formation with formation fractions in mkinerrmin	Johannes Ranke	4	-4/+10

2014-07-22	Formatting TODO	Johannes Ranke	1	-0/+1

2014-07-21	Ignore vignette build timestamp	Johannes Ranke	1	-0/+1

2014-07-21	Residual plots are important	Johannes Ranke	1	-0/+1

2014-07-21	Simplify usage examples	Johannes Ranke	1	-17/+16

2014-07-21	Bugfix, model shorthand, state.ini[[1]] from observed data	Johannes Ranke	11	-231/+279
	- The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes
2014-07-17	Return complete list of initial states after fitting	Johannes Ranke	1	-1/+4
	This is useful for specifying state.ini in a subsequent call to mkinfit
2014-07-17	Handle non-convergence and maximum number of iterations	Johannes Ranke	7	-95/+190
	For details see NEWS.md
2014-07-16	Insert empty lines to have R make separate entries	Johannes Ranke	1	-0/+30

2014-07-14	Small improvements to usage examples	Johannes Ranke	1	-2/+3

2014-07-14	Vignettes as just synced to the static documentation on r-forge	Johannes Ranke	3	-27/+21

2014-07-14	Fix syncinc with r-forge	Johannes Ranke	1	-1/+1

2014-07-14	Bump version as 0.9-31 was released today	Johannes Ranke	1	-1/+1

2014-07-14	Bugfix release version 0.9-31	Johannes Ranke	8	-30/+1136

2014-07-11	It is B. Mikolasch, not M. Mikolasch...	Johannes Ranke	2	-2/+2

2014-07-11	Update of syncing to r-forge without git-svn	Johannes Ranke	1	-15/+12

2014-07-11	Update the date	Johannes Ranke	1	-1/+1

2014-07-11	Improve formatting in FOCUS_L vignette, rebuild vignettes	Johannes Ranke	28	-0/+5

2014-07-07	Coefficient matrix for formation fractions, no sink and one pathway	Johannes Ranke	1	-22/+26

2014-07-03	Add a more complex usage example	Johannes Ranke	1	-1/+17

2014-07-02	Update of vignettes	Johannes Ranke	16	-0/+0

2014-07-02	Do not introduce formation fractions for singular pathways	Johannes Ranke	2	-27/+29
	- As a consequence, we do not need implicit formation fractions in mkinfit
2014-07-02	Warning -> message, and only if initial parameter was not 1	Johannes Ranke	1	-2/+4

2014-07-02	Set implicit formation fraction to 1 even if set otherwise in parms.ini	Johannes Ranke	1	-6/+8

2014-07-02	Internal parameter transformations are optional	Johannes Ranke	1	-2/+2

2014-07-02	Update vignettes - working flawlessly now!	Johannes Ranke	16	-0/+0

2014-07-02	Move handling of implicitly fixed formation fractions to mkinfit	Johannes Ranke	2	-19/+11

2014-07-02	Typo	Johannes Ranke	1	-1/+1

2014-07-02	Support formation fractions without sink pathway, updates	Johannes Ranke	12	-197/+317

2014-07-01	One more source code comment	Johannes Ranke	1	-0/+2

2014-07-01	One more check, update source code comment	Johannes Ranke	1	-2/+3

2014-06-30	Link to the gmkin page on github	Johannes Ranke	1	-1/+1

2014-06-30	Put the hint to the github commit log to the end	Johannes Ranke	1	-2/+4

2014-06-30	Format the NEWS file in markdown, add Makefile target	Johannes Ranke	5	-132/+74

2014-06-28	Rename ChangeLog to NEWS, new entry style, Makefile update	Johannes Ranke	2	-1/+16

2014-06-27	Reorder endpoints in R/endpoints.R, update vignettes	Johannes Ranke	18	-3/+3

2014-06-27	Comment using the additional DT50 values at least once	Johannes Ranke	1	-2/+8

2014-06-27	Reorganize the summary in a more logical order	Johannes Ranke	1	-19/+19

2014-06-27	Add vignettes target, reorganize	Johannes Ranke	1	-17/+23

2014-06-27	Show the upload date and time for winbuilder	Johannes Ranke	1	-0/+1

2014-06-27	Bump version as mkin 0.9-29 was just released	Johannes Ranke	1	-1/+1

2014-06-27	Simplify and correct targets using $(TGZ) and $(TGZVNR)	Johannes Ranke	1	-9/+6

2014-06-27	Only update builds when needed	Johannes Ranke	1	-6/+41

2014-06-27	Vignette rebuilds commited to be in sync with static docs	Johannes Ranke	16	-0/+0

2014-06-26	Updated vignettes by building static documentation	Johannes Ranke	16	-0/+0

2014-06-26	Avoid calculation of formation fractions if fitted	Johannes Ranke	2	-5/+8

2014-06-26	Fix naming of SFORB DT50_bx values, fix docs	Johannes Ranke	2	-3/+3