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2020-11-06Fast analytical solutions for saemix, update.mmkinJohannes Ranke56-741/+1454
Also, use logit transformation for g and for solitary formation fractions, addressing #10.
2020-11-05Fix mean_degparms() if only one optimised parameterJohannes Ranke1-5/+7
2020-11-05Fix link and update docsJohannes Ranke10-97/+121
2020-11-04Revert to use starting values for random effects in nlme.mmkinJohannes Ranke7-20/+10
2020-11-04Update dynamic docsJohannes Ranke2-9/+13
2020-11-04Deprecate cores > 1 in saemix_modelJohannes Ranke1-3/+5
2020-11-03Do not test residuals per default, improve nlme.mmkinJohannes Ranke3-7/+14
Do not give starting values for random effects in nlme.mmkin.
2020-10-27Add summary method for nlme.mmkin objectsJohannes Ranke22-93/+949
Improve and update docs
2020-10-26Small editorial changeJohannes Ranke1-1/+1
2020-10-26Put the legend in its own area for plot.nlme.mmkinJohannes Ranke21-115/+121
2020-10-26Fix another bug in plot.nlme.mmkinJohannes Ranke1-1/+2
2020-10-26Fix a bug in plot.nlme.mmkinJohannes Ranke1-1/+3
2020-10-24Fix a bug for nlme with parent only, improve examplesJohannes Ranke13-150/+32
2020-10-24Improve plot layoutJohannes Ranke6-61/+23
2020-10-24Plot method for nlme.mmkin objectsJohannes Ranke20-189/+624
Update docs
2020-10-24Printing method for mmkin objectsJohannes Ranke3-8/+53
2020-10-22Really fix check for nlme::varConstPropJohannes Ranke4-6/+53
And add output for nlme fit translating the mkinfit error model "obs" into nlme::varIdent().
2020-10-22Fix check for nlme::varConstPropJohannes Ranke2-1/+1
2020-10-22Try 2 to make travis use nlme from my drat repoJohannes Ranke1-1/+3
2020-10-22Update pkgdown docsJohannes Ranke22-113/+201
2020-10-22Improve interface to experimental version of nlmeJohannes Ranke9-24/+158
The experimental nlme version in my drat repository contains the variance function structure varConstProp which makes it possible to use the two-component error model in generalized nonlinear models using nlme::gnls() and in mixed effects models using nlme::nlme().
2020-10-15More gentle example for saemix with combined error modelJohannes Ranke11-49/+47
2020-10-15Get current nlme version from CRAN on TravisJohannes Ranke3-3/+6
Also commit the dontrun instruction for saemix I had wanted to commit and switch back to devel mode for pkgdown
2020-10-15Don't run saemix examples on travis for nowJohannes Ranke1-1/+2
2020-10-15Update online docs for release versionJohannes Ranke142-2297/+2727
2020-10-15Updating docs of current dev versionJohannes Ranke36-156/+522
2020-10-15Use my saemix repo for travisJohannes Ranke1-1/+1
The official repo is not installable at the moment
2020-10-15Reintroduce saemix helper functionsJohannes Ranke10-47/+273
2020-10-08saemix dev version is not installable at the momentJohannes Ranke1-2/+0
2020-10-08Fix another URL, add devcheck targetv0.9.50.3Johannes Ranke11-11/+85
2020-10-08Fix issues for releaseJohannes Ranke92-1670/+1285
2020-10-08Avoid dep on dev version of saemix for releaseJohannes Ranke3-139/+3
2020-09-10Regenerate docs with current roxygenJohannes Ranke3-4/+6
2020-09-01Merge branch 'master' of kolab.jrwb.de:mkinJohannes Ranke3-31/+1
2020-09-01Back-calculated DT50 values for biphasic modelsJohannes Ranke2-1/+12
2020-07-20Require upcoming nlme version, remove anova.nlme.mmkinJohannes Ranke3-31/+1
The method is no longer necessary, now that Bug 17761 is fixed upstream https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761
2020-07-17mkinfit: Ignore unused components of state.iniJohannes Ranke5-6/+20
2020-07-15Bump date to trigger Travis build after clearing cacheJohannes Ranke1-1/+1
2020-07-15Merge branch 'master' of kolab.jrwb.de:mkinJohannes Ranke0-0/+0
2020-07-15Improve testsJohannes Ranke5-49/+90
- Reduce significant digits for the objective function output in mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis
2020-07-15Improve testsJohannes Ranke5-49/+90
- Reduce significant digits for mkinfit(..., quiet = TRUE) as R and R-devel were different on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis
2020-07-15Improve handling of (partially) failing fitsJohannes Ranke6-31/+48
2020-07-15Use try() within mmkinJohannes Ranke1-1/+1
This keeps mmkin from stopping if one of the fits fails. Instead, a try-error is assigned to the respective position in the mmkin object.
2020-06-15vdiffr dev version not really necessaryJohannes Ranke1-1/+0
2020-06-15Test plots on r-devel onlyJohannes Ranke21-237/+252
following the arguments of Xavier Robin https://github.com/r-lib/vdiffr/issues/86#issuecomment-636447231
2020-06-15Use current devel version of vdiffr on TravisJohannes Ranke1-1/+3
2020-06-15Fix a bug, update for current vdiffrJohannes Ranke7-118/+17
Vignette FOCUS_L failed as I had introduced a bug in the handling of warnings. Current vdiffr only runs visual tests if R < 4.1.0, skipping r-devel for now, see https://github.com/r-lib/vdiffr/commit/630a29d013361fd63fea242f531e2db6aef37919
2020-05-29Improve handling of warnings, reorganize testsJohannes Ranke14-166/+354
2020-05-29Warn if standardized residuals are unlikely normalJohannes Ranke14-152/+131
This revealed a bug in the data returned in mkinfit$data in the case of the d_3 algorithm, which also affected the residual plot - the data from the direct fitting was not returned even if this was the better method.
2020-05-28use_of_ff = "max" for shorthand models like "SFO"Johannes Ranke9-33/+35

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