| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2015-05-15 | Make mkinmod quiet in tests | Johannes Ranke | 7 | -13/+16 | |
| 2015-05-15 | Merge branch 'master' into compile_odes | Johannes Ranke | 19 | -431/+556 | |
| Conflicts (resolved manually, deleting code that I had integrated into the RUnit tests for testing the compiled version): .gitignore DESCRIPTION inst/unitTests/runit.mkinerrmin.R inst/unitTests/runit.mkinfit.R tests/testthat/test_mkinpredict_SFO_SFO.R vignettes/FOCUS_L.html | |||||
| 2015-05-15 | Update of vignettes during staticdoc documentation | Johannes Ranke | 3 | -61/+61 | |
| 2015-05-15 | Add synthetic data generated for UBA expertise, tests | Johannes Ranke | 5 | -1/+135 | |
| The new tests are based on the results documented in the expertise I wrote for the UBA (currently unpublished). | |||||
| 2015-05-15 | Quote FME package name in DESCRIPTION | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Relax test tolerance for SFORB, FOCUS B and deSolve | Johannes Ranke | 1 | -2/+2 | |
| While this was OK on my local windows machine, the test failed on winbuilder | |||||
| 2015-05-15 | Better description of the release procedure | Johannes Ranke | 1 | -2/+2 | |
| 2015-05-15 | Make FOMC test for FOCUS A robust towards non-convergence | Johannes Ranke | 1 | -5/+4 | |
| 2015-05-15 | Also migrate test for mkinpredict | Johannes Ranke | 1 | -28/+12 | |
| 2015-05-15 | Correct the date | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Skip testing FOMC with FOCUS A Windows | Johannes Ranke | 1 | -9/+15 | |
| Testing the package on winbuilder shows that the Port algorithm does not converge on Windows with this combination, which is not a problem as the FOMC model is not appropriate for the dataset anyways. | |||||
| 2015-05-15 | Finished migration from RUnit to testthat | Johannes Ranke | 9 | -316/+370 | |
| 2015-05-14 | Start of migration from RUnit to testthat | Johannes Ranke | 10 | -61/+58 | |
| 2015-04-18 | Add a vignette showing the performance of compiled models | Johannes Ranke | 10 | -15/+282 | |
| 2015-04-17 | Add NEWS about compiled models, set the date | Johannes Ranke | 2 | -1/+14 | |
| 2015-04-17 | Make compiled FOMC and DFOP models work | Johannes Ranke | 3 | -6/+37 | |
| - Many thanks @karlines for the hint in ccSolve#1 how to declare the time variable and for writing the ccSolve package in the first place - Add tests for the compiled versions of the FOMC and DFOP models | |||||
| 2015-04-16 | Add tests for default solution method, fix one test | Johannes Ranke | 1 | -3/+12 | |
| 2015-04-16 | Order of parameters needs to be right for compiled models | Johannes Ranke | 1 | -1/+1 | |
| 2015-04-16 | Test what I wanted to test | Johannes Ranke | 1 | -1/+1 | |
| 2015-04-16 | Update copyright header, improve documentation of solution_type | Johannes Ranke | 4 | -16/+22 | |
| 2015-04-16 | Check compiled mkinmod versions in examples and tests | Johannes Ranke | 5 | -7/+56 | |
| Tests all pass (Linux) | |||||
| 2015-04-16 | Merge branch 'compile_odes' | Johannes Ranke | 5 | -14/+57 | |
| 2015-04-16 | Correctly close braces of examples section | Johannes Ranke | 1 | -0/+1 | |
| 2015-04-16 | Pending commit of an updated vignette | Johannes Ranke | 1 | -77/+76 | |
| 2015-04-14 | Compile differential equation models with ccSolve package | Johannes Ranke | 5 | -14/+56 | |
| If the ccSolve package is available, and time is not in the right hand side of the equations (i.e. if only SFO and SFORB models are used), the differential equation model is compiled from auto-generated C code. Currently, one test (FOCUS 2006 D SFO_SFO) fails | |||||
| 2015-02-21 | Avoid NOTES in R CMD check | Johannes Ranke | 3 | -1/+6 | |
| - Export S3 methods - Avoid using undeclared variable names | |||||
| 2015-02-20 | Add termination message to mkinfit, prepare release | Johannes Ranke | 3 | -2/+14 | |
| 2015-02-20 | Fix printing the summary if iterations are not available | Johannes Ranke | 3 | -1/+6 | |
| This was broken for using method.modFit = "SANN" | |||||
| 2014-12-18 | Updated vignettes during staticdoc generation | Johannes Ranke | 3 | -30/+30 | |
| 2014-11-23 | Simply get rid of the warnings when drawing arrows | Johannes Ranke | 1 | -8/+7 | |
| 2014-11-23 | Avoid spurious warning in mkinparplot, bump version | Johannes Ranke | 3 | -6/+18 | |
| 2014-11-23 | Use model as in the original publication | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-21 | Update date and static docs for release to CRANv0.9-34 | Johannes Ranke | 4 | -278/+272 | |
| 2014-11-20 | Add the year of the first distributed KinGUII version | Johannes Ranke | 1 | -3/+3 | |
| 2014-11-13 | Update the date | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-13 | Exclude vignette building timestamp as R CMD check complains | Johannes Ranke | 1 | -0/+1 | |
| 2014-11-13 | Fix code/documentation mismatch | Johannes Ranke | 1 | -2/+2 | |
| 2014-11-13 | Formatting and writing improved | Johannes Ranke | 1 | -1/+2 | |
| 2014-11-13 | Expand the IORE example a bit | Johannes Ranke | 1 | -3/+4 | |
| 2014-11-12 | Add a hint about equivalence of FOMC and IORE models | Johannes Ranke | 1 | -0/+2 | |
| 2014-11-12 | Add an IORE example for parent decline kinetics | Johannes Ranke | 1 | -0/+4 | |
| 2014-11-12 | Update the FOCUS_Z vignette for default "Port" algorithm | Johannes Ranke | 2 | -11/+4 | |
| 2014-11-12 | Fix for IORE in mkinmod | Johannes Ranke | 2 | -4/+9 | |
| 2014-11-12 | Merge branch 'master' of https://github.com/jranke/mkin into iore | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-12 | IORE working for parent and metabolites, introduce mkinsub | Johannes Ranke | 6 | -4/+84 | |
| 2014-11-12 | Fix the typo in the help page, too | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-12 | Merge branch 'master' into iore | Johannes Ranke | 23 | -506/+798 | |
| 2014-11-12 | Fix a typo in the list of possible arguments | Johannes Ranke | 1 | -1/+1 | |
| Thanks to Michael Brauer for the hint | |||||
| 2014-10-29 | Correct name of the DFOP model according to FOCUS kinetics | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-23 | Update to README | Johannes Ranke | 1 | -2/+2 | |
 |
index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
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