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2014-11-12Add an IORE example for parent decline kineticsJohannes Ranke1-0/+4
2014-11-12Update the FOCUS_Z vignette for default "Port" algorithmJohannes Ranke2-11/+4
2014-11-12Fix for IORE in mkinmodJohannes Ranke2-4/+9
2014-11-12Merge branch 'master' of https://github.com/jranke/mkin into ioreJohannes Ranke1-1/+1
2014-11-12IORE working for parent and metabolites, introduce mkinsubJohannes Ranke6-4/+84
2014-11-12Fix the typo in the help page, tooJohannes Ranke1-1/+1
2014-11-12Merge branch 'master' into ioreJohannes Ranke23-506/+798
2014-11-12Fix a typo in the list of possible argumentsJohannes Ranke1-1/+1
Thanks to Michael Brauer for the hint
2014-10-29Correct name of the DFOP model according to FOCUS kineticsJohannes Ranke1-1/+1
2014-10-23Update to READMEJohannes Ranke1-2/+2
2014-10-22Always include 0 on y axis when plotting during the fitJohannes Ranke3-2/+4
2014-10-15Switch to using the Port algorithm per defaultJohannes Ranke7-81/+95
2014-10-14Further formatting improvement for differential equationsJohannes Ranke5-47/+57
2014-10-14Add a comment about transforming fractionsJohannes Ranke1-4/+10
2014-10-14Some cosmeticsJohannes Ranke1-4/+4
2014-10-14Link the the new gmkin homepageJohannes Ranke1-4/+3
2014-10-12Use title case for the titleJohannes Ranke1-2/+2
Tried to adhere to the Chicago Manual of Style, but am not sure about "with".
2014-10-11Start new development versionJohannes Ranke2-1/+3
2014-10-11Updated vignettes by building static documentationJohannes Ranke3-97/+111
2014-10-11Updates intended for releasing mkin 0.9-33Johannes Ranke2-1/+3
2014-10-06Avoid a warning produced by initial fits in gmkinJohannes Ranke2-8/+11
2014-08-30Change to https to avoid messages about leaving secured groundsJohannes Ranke1-1/+1
2014-08-30Correct the link to KinGUIIJohannes Ranke1-1/+1
2014-08-30Add a link to the KinGUII websiteJohannes Ranke1-1/+2
2014-08-29Avoid an unnecessary warningJohannes Ranke2-5/+5
2014-08-25Bug fix and unit tests for mkinerrminJohannes Ranke9-98/+146
See NEWS.md for details
2014-08-25Remove intermediate vignette files when cleaningJohannes Ranke1-0/+1
2014-08-20Fix mkinfit for a special situationJohannes Ranke3-8/+10
See NEWS.md: When the parent was not the (only) variable with the highest value out of all variables in the observed data, it could happen that the initial value (state.ini) was not initialised.
2014-08-20Update NEWS with change from yesterdayJohannes Ranke1-0/+6
2014-08-19Small reformulationsJohannes Ranke1-6/+5
2014-08-19Improve formatting of differential equations in outputJohannes Ranke5-4/+5
Rebuild of FOCUS_Z vignette with improved formatting
2014-08-02More to do, gathered during the software validation checksJohannes Ranke1-0/+2
2014-07-31More to do, gathered during the software validation checksJohannes Ranke1-0/+5
2014-07-25Fix internal naming of g for transform_fractions=FALSEJohannes Ranke3-3/+18
2014-07-24Improve formulationJohannes Ranke1-1/+1
2014-07-24Semantic correction in help fileJohannes Ranke1-1/+1
2014-07-24Bump version, better default for state.iniJohannes Ranke4-3/+16
2014-07-24Update vignettes with 0.9-32 just released to CRANJohannes Ranke3-39/+33
2014-07-24Avoid artificial zero residual in mkinresplotJohannes Ranke3-2/+5
2014-07-23Parallel metabolite formation with formation fractions in mkinerrminJohannes Ranke4-4/+10
2014-07-22Formatting TODOJohannes Ranke1-0/+1
2014-07-21Ignore vignette build timestampJohannes Ranke1-0/+1
2014-07-21Residual plots are importantJohannes Ranke1-0/+1
2014-07-21Simplify usage examplesJohannes Ranke1-17/+16
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke11-231/+279
- The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes
2014-07-17Return complete list of initial states after fittingJohannes Ranke1-1/+4
This is useful for specifying state.ini in a subsequent call to mkinfit
2014-07-17Handle non-convergence and maximum number of iterationsJohannes Ranke7-95/+190
For details see NEWS.md
2014-07-16Merge branch 'master' into ioreJohannes Ranke3-3/+34
2014-07-16Insert empty lines to have R make separate entriesJohannes Ranke1-0/+30
2014-07-14Small improvements to usage examplesJohannes Ranke1-2/+3

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