| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2023-08-09 | Go back to focal, skip drat repo on travis | Ranke Johannes | 1 | -2/+1 | |
| 2023-08-09 | Try jammy on travis | Ranke Johannes | 1 | -1/+1 | |
| 2023-08-09 | Depend on saemix 3.2 to control test results | Ranke Johannes | 1 | -1/+1 | |
| 2023-08-09 | Don't install saemix 3.2 from github any more | Ranke Johannes | 4 | -19/+19 | |
| Emmanuelle has made an official release to CRAN in June | |||||
| 2023-08-08 | Update docs, check and test on RStudio server | Ranke Johannes | 5 | -56/+49 | |
| 2023-08-08 | Fix a logical error in the mesotrione vignette | Ranke Johannes | 2 | -1/+1 | |
| 2023-08-08 | RStudio project infrastructure | Ranke Johannes | 3 | -0/+25 | |
| 2023-08-07 | Typos | Ranke Johannes | 1 | -2/+2 | |
| 2023-08-04 | Mesotrione data and vignette | Johannes Ranke | 15 | -703/+1318 | |
| The vignette illustrates pH dependent degradation (covariate modelling) with some detail for the parent compound. Also, a bug in the saem method of the illparms function was fixed, which prevented to find ill-defined parameters in cases where e.g. slopes of covariate models have a negative estimate. | |||||
| 2023-05-19 | Prepare release of v1.2.4v1.2.4 | Johannes Ranke | 185 | -5978/+3258 | |
| - Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release | |||||
| 2023-05-08 | Fix obtaining endpoints for user defined covariate values | Johannes Ranke | 2 | -3/+6 | |
| 2023-04-20 | Update vignettes in dev docs | Johannes Ranke | 31 | -260/+341 | |
| After the post-release fixes to the release version online docs | |||||
| 2023-04-20 | Switch docs back to devel mode | Johannes Ranke | 1 | -2/+2 | |
| 2023-04-20 | Merge branch 'v1.2.3_pkgdown' | Johannes Ranke | 272 | -1788/+15228 | |
| 2023-04-20 | Fix and rebuild documentation, see NEWS | Johannes Ranke | 269 | -1784/+15174 | |
| I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well. | |||||
| 2023-04-20 | Small changes to the multistart vignette | Johannes Ranke | 1 | -16/+11 | |
| - Fix legend positions and y axis scaling - Include two more variants in the model comparison at the end, and fix the logic of the discussion | |||||
| 2023-04-17 | Post release changes to the docs | Johannes Ranke | 4 | -17/+54 | |
| The cyantraniliprole and dmta pathway vignettes were not working any more with the latest changes in deSolve and mkin. All docs need a rebuild. | |||||
| 2023-04-17 | Bump version, add release date of v1.2.3 | Johannes Ranke | 2 | -3/+3 | |
| 2023-04-17 | Improve docs of multistart method | Johannes Ranke | 22 | -186/+99 | |
| 2023-04-16 | Bump datev1.2.3 | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-16 | Suppress a warning about a path "(embedding)" | Johannes Ranke | 1 | -2/+4 | |
| 2023-04-16 | Skip another test on CRAN to save CPU cycles | Johannes Ranke | 1 | -0/+2 | |
| 2023-04-16 | Complete rebuild of static docs | Johannes Ranke | 213 | -1253/+3513 | |
| 2023-04-16 | Add coverage target for local coverage report | Johannes Ranke | 3 | -0/+6 | |
| I get almost 90% when testing locally | |||||
| 2023-04-16 | Make travis wait longer also for codecov coverage | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-16 | Make the template work on Windows (with RStudio) | Johannes Ranke | 1 | -4/+8 | |
| It seems that we cannot use stored DLLs (for pathway fits) on clusters when using Windows, where we use PSOCK clusters. Although it works on winbuilder in the tests in tests/testthat/test_compiled.R. Maybe it is something RStudio specific. | |||||
| 2023-04-16 | Skip the Eigenvalue based saem test | Johannes Ranke | 2 | -13/+18 | |
| It took too long, and this solution method is not recommended. We are saving 140 seconds here on my system, so more time is saved on travis. | |||||
| 2023-04-15 | Need even more time for tests now | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-15 | Fix the travis_wait command | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-15 | The tests run longer now, so make travis wait | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-15 | Increase test coverage | Johannes Ranke | 6 | -20/+92 | |
| Also, using mkin analytical solutions for more than one observed variable is not supported (but could be if out_values would be reordered). | |||||
| 2023-04-15 | Update description and news | Johannes Ranke | 2 | -3/+7 | |
| 2023-04-15 | Fix logic in test | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-15 | Merge branch 'codecov' | Johannes Ranke | 1 | -0/+1 | |
| 2023-04-15 | Fix platform dependence in test | Johannes Ranke | 1 | -1/+5 | |
| 2023-04-15 | Make predefined symbols safer | Johannes Ranke | 9 | -28/+113 | |
| We still need to create a parallel processing cluster _after_ creating a compiled model that is moved to a user defined location, at least I did not find another way to make it work. This is not a problem with parallel processing without a cluster, which is not available on Windows. | |||||
| 2023-04-15 | Don't try(mkinpredict), it would still error later | Johannes Ranke | 1 | -3/+2 | |
| 2023-04-15 | Move preprocessing of DMTA data to the test setup | Johannes Ranke | 2 | -11/+12 | |
| 2023-04-15 | Make using predefined symbols optional | Johannes Ranke | 1 | -2/+11 | |
| I got crashes under some circumstances when using symbols stored in the mkinmod object. One such circumstance was the use of a moved DLL in combination with parallel computing on a cluster. As I cannot exactly define at the moment when this happens, it is better to make this an opt in. | |||||
| 2023-04-14 | Dont fix mean_degparms if it does not exist | Johannes Ranke | 1 | -4/+6 | |
| 2023-04-14 | Reintroduce codecov badge with correct link | Johannes Ranke | 1 | -0/+1 | |
| 2023-04-06 | Remove codecov badge, as the link does not work | Johannes Ranke | 2 | -2/+1 | |
| Also, every time I would like to log in to codecov.io with my github account, it tells me that it wants complete read and write access to all my repositories, which I do not want to grant for obvious reasons. | |||||
| 2023-04-06 | Fix a bug with moved DLLs and current deSolve | Johannes Ranke | 3 | -24/+18 | |
| In mkinmod, dll_info was not included in the returned model object in the case that the DLL was moved to a user defined directory. This is now fixed. | |||||
| 2023-04-06 | Check notes on winbuilder | Johannes Ranke | 3 | -6/+6 | |
| - The CRAN spell check does not like 'backend', using 'back end' now - URL updates in README | |||||
| 2023-04-02 | Bump date | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-02 | Deal with covariates in summary for saem.mmkin objects | Johannes Ranke | 5 | -20/+49 | |
| 2023-04-01 | Update tests on 5950x | Johannes Ranke | 7 | -166/+159 | |
| Update platform dependent test plots | |||||
| 2023-03-23 | Support covariates in endpoints() | Johannes Ranke | 12 | -49/+100 | |
| 2023-03-22 | Merge branch 'main' into covariate_parms_and_endpoints | Johannes Ranke | 10 | -160/+169 | |
| 2023-03-22 | Fix typo in mkinerrmin | Johannes Ranke | 10 | -160/+169 | |
| Thanks to Sebastian Meyer for spotting it. | |||||
 |
index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
| aboutsummaryrefslogtreecommitdiff |