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2019-10-21Fix platform dependence of the correlation matrixJohannes Ranke4-29/+10
Especially on winbuilder (i386 and amd64)
2019-10-21Explicit solution_type for FOCUS D in testsJohannes Ranke5-11/+156
Because on winbuilder obviously gcc was not found, so the Eigenvalue based solution method was used, leading to a test failure when comparing the summary, as the solution method is listed
2019-10-21Skip an offensive test on TravisJohannes Ranke1-0/+1
2019-10-21Tests all pass locallyJohannes Ranke1-1/+1
2019-10-21Improve some plotting routines, more testsJohannes Ranke21-98/+792
Static documentation rebuilt by pkgdown
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke2-9/+0
2019-10-21Improve tests, remove geometric_meanJohannes Ranke16-304/+362
2019-10-21Refactor mkinfit, infrastructure workJohannes Ranke19-440/+535
mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7.
2019-10-21Improve test log formattingJohannes Ranke1-0/+1
2019-09-19Revert a change in the original add_err functionJohannes Ranke2-5/+5
that I made in the first attempt to work around the issue with the %in% operator in the example code Static documentation rebuilt by pkgdown
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke20-219/+681
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-19Comment out the code of the add_err() functionJohannes Ranke1-148/+146
as it leads to problems with current pkgdown versions r-lib/pkgdown#1149
2019-09-18Static documentation rebuilt by pkgdownJohannes Ranke13-69/+67
to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly
2019-09-18Add url: tag to _pkgdown.ymlJohannes Ranke15-66/+263
Static documentation rebuilt by pkgdown
2019-09-18Further corrections of the twa vignetteJohannes Ranke14-398/+223
Static documentation rebuilt by pkgdown
2019-09-18Correct and rebuild docsJohannes Ranke73-913/+1657
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-09-18Add hockey stick formulas to maximum twa vignetteJohannes Ranke3-10/+393
2019-09-02Some changes to improve plots on beamer slidesJohannes Ranke8-20/+41
2019-07-09Address winbuilder R-devel warning about usageJohannes Ranke3-5/+39
2019-07-09Merge branch 'master' of kolab.jrwb.de:mkinJohannes Ranke0-0/+0
2019-07-09Adaptations for gmkinJohannes Ranke42-743/+969
Address winbuilder check problems, update check log, update of static docs
2019-07-08Adaptations for gmkinJohannes Ranke1-1/+3
2019-07-08Support summarizing older fitsJohannes Ranke6-17/+51
generated with mkin < 0.9.49.5
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke93-1032/+849
2019-07-04Update README and introductory vignetteJohannes Ranke5-45/+106
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke19-81/+91
Static documentation rebuilt by pkgdown
2019-07-03Skip a test on CRAN/winbuilderJohannes Ranke1-0/+1
The test uses multiple cores in order to complete within a reasonable time
2019-07-03Add check and test logsJohannes Ranke3-17/+9
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke18-91/+91
Static documentation rebuilt by pkgdown
2019-07-02TypoJohannes Ranke1-1/+1
2019-06-20Merge pull request #8 from wibeasley/patch-1Johannes Ranke1-1/+1
change to `superseded`
2019-06-19change to `superseded`Will Beasley1-1/+1
https://en.wiktionary.org/wiki/superseed
2019-06-05Merge branch 'algorithm'Johannes Ranke159-495/+1198
2019-06-05Adapt tests to new algorithms and outputJohannes Ranke4-381/+14
One of the tests exceeded the number of iterations when using the d_3 error model algorithm, so only use "direct" in this case.
2019-06-05Add error model algorithm to outputJohannes Ranke17-110/+198
2019-06-04Fix a bug introduced in the last commitJohannes Ranke2-3/+5
2019-06-04For the d_3 algorithm, report which was better, if anyJohannes Ranke1-2/+13
2019-06-04Add sources for test data for better transparencyJohannes Ranke1-0/+55
2019-06-04Also wait for codecov...Johannes Ranke1-1/+1
2019-06-04Fix travis configuration (hopefully)Johannes Ranke1-1/+1
2019-06-04Let travis wait longer for the check to finishJohannes Ranke1-0/+4
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke156-528/+1233
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-06-04Algorithms direct, two-, three-, fourstep, IRLSJohannes Ranke2-14/+86
All of them are working now and allow for comparison Based on SFO, DFOP and HS fits to twelve test datasets, only the combination of direct and threestep is needed to find the lowest AIC
2019-06-03Status von Samstag morgen - untestedJohannes Ranke2-37/+105
2019-05-31Experimental data for finding error model algorithmJohannes Ranke2-0/+65
2019-05-24TypoJohannes Ranke1-1/+1
2019-05-23Fix a bug that could lead to wrong chi2 error levelsJohannes Ranke5-29/+32
2019-05-21Clarify the relation of the two-component error modelJohannes Ranke1-2/+3
in relation to the original version by Rocke and Lorenzato
2019-05-20Only use colors for error model "obs"Johannes Ranke1-3/+3
2019-05-14Don't use remote CRAN incoming checksJohannes Ranke1-1/+1

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