aboutsummaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2019-10-31Add likelihood ratio test and other methods, fixesJohannes Ranke33-129/+1672
The likelihood ratio test method is lrtest, in addition, methods for update and residuals were added.
2019-10-29Return single parameters correctly from confintJohannes Ranke3-31/+48
Static documentation rebuilt by pkgdown
2019-10-28Parallel computation for confidence intervalsJohannes Ranke4-36/+268
Only on Linux at the moment. Some more examples in the help page. Remove the distribution argument for the quadratic method
2019-10-28Improve formattingJohannes Ranke3-2/+4
2019-10-28Fix the cutoff for likelihood based intervalsJohannes Ranke7-86/+105
The cutoff now matches what is given by Venzon and Moolgavkar (1988). Also, confidence intervals closely match intervals obtained with stats4::confint in the test case where an stats4::mle object is created from the likelihood function in one test case. Static documentation rebuilt by pkgdown
2019-10-26Fix checks and testsJohannes Ranke15-33/+513
Static documentation rebuilt by pkgdown
2019-10-26Address some check and test failuresJohannes Ranke4-6/+7
2019-10-26parms and confint methodsJohannes Ranke9-75/+407
The confint method can do profile likelihood based confidence intervals!
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke48-1277/+1275
2019-10-25Use roxygen for functions and methodsJohannes Ranke75-3834/+5103
2019-10-22Somehow the figures weren't committed yetJohannes Ranke2-0/+195
2019-10-22Two more plotting testsJohannes Ranke2-4/+8
2019-10-22Update README.htmlJohannes Ranke1-15/+20
2019-10-22Skip the visual test that still fails on travisJohannes Ranke1-1/+2
2019-10-22Go back to d_3 for errmod = "obs"Johannes Ranke6-47/+20
in the hope that this makes plotting cross-platform also for this error model
2019-10-22Improved visual testingJohannes Ranke9-16/+487
2019-10-21Local checkJohannes Ranke1-6/+23
2019-10-21Quote percent signs in Rhelp filesJohannes Ranke4-19/+17
Static documentation rebuilt by pkgdown
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke7-32/+38
2019-10-21Adress errors and notes on winbuilderJohannes Ranke3-14/+4
2019-10-21Fix platform dependence of the correlation matrixJohannes Ranke4-29/+10
Especially on winbuilder (i386 and amd64)
2019-10-21Explicit solution_type for FOCUS D in testsJohannes Ranke5-11/+156
Because on winbuilder obviously gcc was not found, so the Eigenvalue based solution method was used, leading to a test failure when comparing the summary, as the solution method is listed
2019-10-21Skip an offensive test on TravisJohannes Ranke1-0/+1
2019-10-21Tests all pass locallyJohannes Ranke1-1/+1
2019-10-21Improve some plotting routines, more testsJohannes Ranke21-98/+792
Static documentation rebuilt by pkgdown
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke2-9/+0
2019-10-21Improve tests, remove geometric_meanJohannes Ranke16-304/+362
2019-10-21Refactor mkinfit, infrastructure workJohannes Ranke19-440/+535
mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7.
2019-10-21Improve test log formattingJohannes Ranke1-0/+1
2019-09-19Revert a change in the original add_err functionJohannes Ranke2-5/+5
that I made in the first attempt to work around the issue with the %in% operator in the example code Static documentation rebuilt by pkgdown
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke20-219/+681
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-19Comment out the code of the add_err() functionJohannes Ranke1-148/+146
as it leads to problems with current pkgdown versions r-lib/pkgdown#1149
2019-09-18Static documentation rebuilt by pkgdownJohannes Ranke13-69/+67
to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly
2019-09-18Add url: tag to _pkgdown.ymlJohannes Ranke15-66/+263
Static documentation rebuilt by pkgdown
2019-09-18Further corrections of the twa vignetteJohannes Ranke14-398/+223
Static documentation rebuilt by pkgdown
2019-09-18Correct and rebuild docsJohannes Ranke73-913/+1657
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-09-18Add hockey stick formulas to maximum twa vignetteJohannes Ranke3-10/+393
2019-09-02Some changes to improve plots on beamer slidesJohannes Ranke8-20/+41
2019-07-09Address winbuilder R-devel warning about usageJohannes Ranke3-5/+39
2019-07-09Merge branch 'master' of kolab.jrwb.de:mkinJohannes Ranke0-0/+0
2019-07-09Adaptations for gmkinJohannes Ranke42-743/+969
Address winbuilder check problems, update check log, update of static docs
2019-07-08Adaptations for gmkinJohannes Ranke1-1/+3
2019-07-08Support summarizing older fitsJohannes Ranke6-17/+51
generated with mkin < 0.9.49.5
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke93-1032/+849
2019-07-04Update README and introductory vignetteJohannes Ranke5-45/+106
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke19-81/+91
Static documentation rebuilt by pkgdown
2019-07-03Skip a test on CRAN/winbuilderJohannes Ranke1-0/+1
The test uses multiple cores in order to complete within a reasonable time
2019-07-03Add check and test logsJohannes Ranke3-17/+9
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke18-91/+91
Static documentation rebuilt by pkgdown
2019-07-02TypoJohannes Ranke1-1/+1

Contact - Imprint