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2023-03-14deSolve 1.35 is on CRAN now, thanks Thomas!Johannes Ranke1-1/+0
2023-02-26Improve documentation of the formatJohannes Ranke2-3/+38
2023-02-23Basic check if covariate data are usableJohannes Ranke1-4/+11
2023-02-18Tell travis to take deSolve from drat repoJohannes Ranke1-0/+1
It seems that eddelbuettel/r-ci#10 is still bugging me
2023-02-18Mention recent case studies in READMEJohannes Ranke4-10/+21
2023-02-17Update online docs, fix bug that surfacedJohannes Ranke42-294/+750
2023-02-17Update benchmark results for 7950XJohannes Ranke12-124/+210
2023-02-17Rethink versioning and remove 7950X benchmarksJohannes Ranke4-2/+2
I will add benchmark data for 1.2.0, 1.2.2 and 1.2.3 for better comparison
2023-02-17Mention deSolve development in NEWSJohannes Ranke1-2/+6
2023-02-17Finish adapting to upcoming deSolveJohannes Ranke18-229/+267
2023-02-17Commit prebuilt vignettes from desktopJohannes Ranke3-0/+0
2023-02-17Merge remote-tracking branch 'origin/main' into faster_lsodaJohannes Ranke4-6/+7
2023-02-17Fix path, build target for prebuilt pdf vignettesJohannes Ranke2-1/+4
2023-02-13Update mmkin docs, parallel is not loaded any moreJohannes Ranke1-4/+3
2023-02-13Prepare to keep prebuilt vignettes as pdf in gitJohannes Ranke1-1/+0
2023-02-13WIP adapting to new deSolve with faster lsodaJohannes Ranke5-100/+104
2023-02-13Merge branch 'main' into custom_lsoda_callJohannes Ranke494-14040/+33507
2023-01-28Update saem benchmark with new CPUJohannes Ranke3-22/+123
2023-01-28Some improvements to the READMEJohannes Ranke4-53/+202
2023-01-28Build online HTML versions of prebuilt vignettesJohannes Ranke39-49/+10017
Also, give some structure to the menu for selecting articles
2023-01-09Prebuilt PDF vignettes, summary_listingJohannes Ranke74-607/+6255
2023-01-05Don't preschedule multistart runsJohannes Ranke1-2/+5
Sometimes a lot of them fail, so we were wasting time
2023-01-04Update documentation of 'use_of_ff' argumentJohannes Ranke1-1/+1
2023-01-03Neutral names for code chunks in the templateJohannes Ranke1-5/+4
2023-01-03Reflect changed name of dll directory in templateJohannes Ranke2-1/+2
2023-01-03Improve template text, use neutral name for dll_dirJohannes Ranke1-6/+6
2023-01-03Improved skeleton for hierarchical fitsJohannes Ranke4-22/+175
Now with working pathway fits using SFORB-SFO2 (only two parallel metabolites instead of three) as the data for compound Ia was not sufficient for a reliable fit.
2023-01-02Fix no_random_effect with character vectorJohannes Ranke1-1/+1
2023-01-02Echo R code per default in markdown templateJohannes Ranke1-1/+1
2022-12-22Improve code formatting in template skeletonJohannes Ranke1-1/+3
2022-12-19Rename template folder, create formatJohannes Ranke12-48/+110
Instead of rmarkdown::pdf_document, mkin::hierarchical_kinetics is used as a document format in the template. In this way, the template file can be freed from some R code and yaml options that the average user does not have to be aware of.
2022-12-19Template and spreadsheet for hierarchical kineticsJohannes Ranke6-1/+198
The template only shows parent data evaluation without covariate models for now. The spreadsheet will also be useful for unit testing of the read_spreadsheet function.
2022-12-15List random effects correlations in output if anyJohannes Ranke14-274/+422
Update docs
2022-12-12Run tests with new CPU and RAMJohannes Ranke1-26/+26
2022-12-07Fix parplot for the case of failed multistart runsJohannes Ranke3-2/+4
2022-12-07Check slopes in saemix covariate modelsJohannes Ranke4-27/+43
2022-12-06Some parplot improvementsJohannes Ranke9-178/+183
llquant argument, improved legend text, tests
2022-12-02Update online docsJohannes Ranke2-2/+2
2022-12-02Update test log with current R-develJohannes Ranke1-42/+23
One printout and four plots are different using current R-devel. These are currently skipped on CRAN. These test were run with the development version of saemix (my branch installable_dev_version). If saemix from CRAN is used, there are some more differences due to different error model parameters
2022-12-02Avoid redundant warnings in summariesJohannes Ranke2-3/+4
2022-12-02Avoid error message at testthat terminationJohannes Ranke2-26/+29
https://github.com/r-lib/processx/issues/236
2022-12-02Update online docsJohannes Ranke7-14/+95
2022-12-01Possibility to manually specify no_random_effects in mhmkinJohannes Ranke9-94/+187
2022-11-29Complete starting values in summary for saem.mmkin fitsJohannes Ranke9-45/+55
Also update tests to the changes in mhmkin (see NEWS)
2022-11-25mhmkin: Easy specification of ill-defined parmsJohannes Ranke3-28/+28
The argument 'no_random_effect' now accepts an illparms.mhmkin object
2022-11-24Start online docs of the development versionJohannes Ranke181-8344/+7033
2022-11-22Update and improve READMEJohannes Ranke2-31/+34
2022-11-22Start new development versionJohannes Ranke5-19/+18
2022-11-19Confirm which test fail on R-develv1.2.1Johannes Ranke3-37/+112
2022-11-18Move two saem fits from setup script to skipped testsJohannes Ranke6-34/+40
Save winbuilder/CRAN check time...

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