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2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke42-217/+266
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2021-02-04Update README.htmlJohannes Ranke1-40/+2
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke199-3097/+4966
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2021-01-25Update visual testsJohannes Ranke3-1895/+1895
2021-01-25Some more plotting improvementsJohannes Ranke3-8/+8
2021-01-25Change default ylab in plot.mkinfit, explicit ylab for plot.mmkinJohannes Ranke36-58/+62
See NEWS.md. Closes #12
2021-01-22Switch to the master branch of saemix develJohannes Ranke1-1/+1
2021-01-22We do not need to suppress saemix plots any moreJohannes Ranke2-16/+1
This makes fitting with saem within parallel::mclapply much faster and, surprisingly, much less hungry for RAM.
2021-01-11Rebuild docsJohannes Ranke14-73/+97
2021-01-06Make saemix and corresponding tests optionalJohannes Ranke16-118/+187
Address release critical check and test issues
2020-12-21plot.mixed: Possibility to overlay predictionsJohannes Ranke9-42/+95
2020-12-19Possibility to override automatic starting parameters for saemJohannes Ranke1-4/+10
2020-12-19Update docsJohannes Ranke6-17/+263
2020-12-19Dimethenamid data, normalisation optionsJohannes Ranke14-22/+254
2020-12-17Remove two skipped (on Travis) tests to reduce noiseJohannes Ranke3-217/+1
2020-12-17Another attempt to install saemixextension from my branchJohannes Ranke1-1/+1
2020-12-17nlme with varConstProp has been publishedJohannes Ranke1-4/+1
so no need to explicitly install it on Travis any more But as I reset my master branch of saemixextension to upstream we need my jr branch with the silent logLik method
2020-12-17Some package switched from git2r to gertJohannes Ranke1-0/+1
so we need libgit2-dev on the system
2020-12-16And add the second candidate modelJohannes Ranke4-1/+30
2020-12-16and update docsJohannes Ranke4-22/+19
2020-12-16Print the model not the data for D24Johannes Ranke1-1/+1
2020-12-16Add printout of d24 model and update docsJohannes Ranke12-30/+49
2020-12-15Remove leftoversJohannes Ranke1-3/+2
2020-12-11Update README for cgit.jrwb.deJohannes Ranke1-6/+54
2020-12-11Update static docsJohannes Ranke19-137/+406
2020-12-10nlme with varConstProp is releasedJohannes Ranke2-2/+5
Also fix incompatibility with saem fits from earlier mkin versions
2020-12-10Tried to find a fast test for deSolve in saemixJohannes Ranke2-2/+7
But could not find one.
2020-12-10Add a test for saemix with deSolveJohannes Ranke3-17/+32
But skip the test as it takes too long to always run
2020-12-09Make saem using mkinpredict work againJohannes Ranke4-67/+78
I threw out mclapply as it did not play well with the linear algebra routines used in the saemix code. Most of the change is actually indentation in the code creating the model function. But there is an important fix in mkinpredict which I had broken.
2020-12-09Some test fixesJohannes Ranke4-44/+11
2020-12-09Add more tests and fix HS in saemJohannes Ranke6-1224/+1318
2020-12-09Fix a test I accidentally brokeJohannes Ranke2-18/+13
2020-12-09And moreJohannes Ranke3-1/+16
2020-12-09Any yet more testsJohannes Ranke5-17/+36
2020-12-09Update test output and reduce precision for travisJohannes Ranke4-27/+27
2020-12-09More testsJohannes Ranke10-2613/+1533
2020-12-09Try other mixed fits for vdiffr on travisJohannes Ranke4-4810/+1290
2020-12-09Test print method for mixed.mmkinJohannes Ranke4-4/+34
2020-12-09Make tests more robust, remove two redundant onesJohannes Ranke4-44/+22
2020-12-09Fix tests and rerunJohannes Ranke5-111/+98
2020-12-09Some more tests that may work on travis nowJohannes Ranke2-27/+28
2020-12-09Some more testsJohannes Ranke6-69/+196
2020-12-09Don't test on devel, skip failing vdiffr testsJohannes Ranke2-2/+1
I can test on R-devel locally for preparing releases
2020-12-08Test plots on R-release and cache packages againJohannes Ranke24-3138/+3139
2020-12-08Do not cache packagesJohannes Ranke1-2/+0
2020-12-08Install svglite from github on travisJohannes Ranke1-0/+1
2020-12-08Try to figure out while vdiffr failsJohannes Ranke1-4/+4
2020-12-08mixed.mmkin and test coverageJohannes Ranke24-88/+10487
2020-12-07Updates after inline 0.3.17 has been releasedJohannes Ranke2-2/+2
2020-12-07Possibility to use saemix transformations in some casesJohannes Ranke1-45/+127
Namely for SFO, DFOP, SFO-SFO and DFOP-SFO

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