| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2015-06-26 | Merge branch 'master' of https://github.com/jranke/mkin | Johannes Ranke | 0 | -0/+0 | |
| 2015-06-26 | Fix x axis scaling in mkinparplot | Johannes Ranke | 2 | -2/+6 | |
| 2015-06-26 | Do caching for the FOCUS_Z vignette | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-26 | Do caching for the FOCUS_Z vignette | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-26 | More plotting in help files, fix Make- and .*ignore files | Johannes Ranke | 9 | -25/+18 | |
| 2015-06-26 | Subsetting and plotting for mmkin objects | Johannes Ranke | 7 | -4/+201 | |
| Including documentation and documentation improvements for mmkin(). | |||||
| 2015-06-25 | Small fixes | Johannes Ranke | 2 | -2/+3 | |
| 2015-06-25 | Add CRAN release dates to NEWS.md | Johannes Ranke | 3 | -46/+37 | |
| Remove leftovers from using a plain text NEWS file | |||||
| 2015-06-25 | Do not convert NEWS.md any more as it is now rendered on CRAN | Johannes Ranke | 1 | -4/+1 | |
| via wch/r-source@9ffe87264a1cd59a31a829f72d57af0f1bfa327a | |||||
| 2015-06-25 | Rename quick install target to quickinstall | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-25 | Depend on parallel package, todays date | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-25 | Fix fitting with parLapply, doc fix | Johannes Ranke | 2 | -1/+2 | |
| 2015-06-25 | Fix build targets in Makefile | Johannes Ranke | 1 | -1/+0 | |
| 2015-06-25 | Add mmkin for testing | Johannes Ranke | 3 | -1/+113 | |
| 2015-06-24 | Update and format fix | Johannes Ranke | 1 | -0/+20 | |
| Add newlines to NEWS.md to get correct formatting in NEWS | |||||
| 2015-06-24 | Staticdocs site_path argument in build_site() now works | Johannes Ranke | 2 | -9/+6 | |
| This long-standing issue finally got fixed in 2f56137fc9ba60bfea54e575d233f4e696bb8a5a | |||||
| 2015-06-23 | Version bump, keep logs of build, check and test | Johannes Ranke | 7 | -4/+112 | |
| 2015-06-23 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-38 | Johannes Ranke | 5 | -60/+60 | |
| r-forge | |||||
| 2015-06-23 | Remove Rplots.pdf that is being built by staticdocs | Johannes Ranke | 4 | -1/+4 | |
| 2015-06-23 | Also copy figures generated by README.Rmd for staticdocs index | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-23 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-37 | Johannes Ranke | 6 | -49/+49 | |
| r-forge | |||||
| 2015-06-23 | Set the correct date in DESCRIPTION | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-23 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 6 | -47/+47 | |
| r-forge | |||||
| 2015-06-23 | Remove file that was accidentally added | Johannes Ranke | 1 | -0/+0 | |
| 2015-06-23 | Rename the check-no-vignettes target to quickcheck | Johannes Ranke | 1 | -2/+2 | |
| and do not check using the --as-cran option to skip the check for CRAN incoming feasibility. | |||||
| 2015-06-23 | Fix the changed documentation | Johannes Ranke | 1 | -3/+4 | |
| 2015-06-23 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 6 | -58/+58 | |
| r-forge | |||||
| 2015-06-23 | Small documenation changes | Johannes Ranke | 5 | -15/+17 | |
| 2015-06-23 | Hopefully fix compiling on Solaris, verbose option | Johannes Ranke | 3 | -14/+39 | |
| - Only declare the time variable in the C code when needed in the derivatives. - Add the option to show verbose output of cfunction() when compiling the model to a shared library. | |||||
| 2015-06-23 | Improve formatting of \dontrun section | Johannes Ranke | 1 | -2/+4 | |
| 2015-06-22 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 8 | -57/+57 | |
| r-forge | |||||
| 2015-06-22 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 5 | -55/+52 | |
| r-forge | |||||
| 2015-06-22 | Another reorganisation of vignette building by GNUmakefile | Johannes Ranke | 3 | -38/+31 | |
| 2015-06-22 | Watch the vignettes built locally as well for building | Johannes Ranke | 1 | -0/+2 | |
| 2015-06-22 | Vignettes rebuilt by staticdocs::build_site() for r-forge | Johannes Ranke | 4 | -52/+48 | |
| 2015-06-22 | Version bump, correct benchmark in vignette/compiled_models | Johannes Ranke | 14 | -838/+447 | |
| Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed. | |||||
| 2015-06-21 | Rebuild vignettes with the released package installed | Johannes Ranke | 6 | -59/+63 | |
| 2015-06-21 | Vignettes as rebuilt for the static documentation for r-forge | Johannes Ranke | 4 | -33/+33 | |
| 2015-06-21 | Do the t-test for untransformed parametersv0.9-36 | Johannes Ranke | 14 | -240/+340 | |
| 2015-06-20 | Reorganize transform_odeparms example, reduce check time | Johannes Ranke | 1 | -1/+5 | |
| 2015-06-20 | Correction and improvement of NEWS | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-20 | Workaround for hadley/testthat#144 | Johannes Ranke | 1 | -0/+4 | |
| 2015-06-20 | Suppress compiler warning for sometimes unused time variable | Johannes Ranke | 1 | -1/+3 | |
| 2015-06-20 | Low-level generation of compiled models | Johannes Ranke | 17 | -89/+137 | |
| As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. | |||||
| 2015-06-05 | FOCUS D vignette generated from Makefile | Johannes Ranke | 1 | -83/+248 | |
| 2015-06-05 | News entry for new vignette FOCUS_D | Johannes Ranke | 1 | -0/+4 | |
| 2015-06-05 | Add a simple vignette with an evaluation of FOCUS D | Johannes Ranke | 3 | -1/+356 | |
| 2015-06-05 | Make the examples that are run more quiet | Johannes Ranke | 1 | -2/+2 | |
| 2015-05-19 | Typo in dummy file | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-19 | Forgot to commit the README source file | Johannes Ranke | 1 | -4/+4 | |
 |
index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
| aboutsummaryrefslogtreecommitdiff |