Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2020-11-04 | Revert to use starting values for random effects in nlme.mmkin | Johannes Ranke | 7 | -20/+10 | |
2020-11-04 | Update dynamic docs | Johannes Ranke | 2 | -9/+13 | |
2020-11-04 | Deprecate cores > 1 in saemix_model | Johannes Ranke | 1 | -3/+5 | |
2020-11-03 | Do not test residuals per default, improve nlme.mmkin | Johannes Ranke | 3 | -7/+14 | |
Do not give starting values for random effects in nlme.mmkin. | |||||
2020-10-27 | Add summary method for nlme.mmkin objects | Johannes Ranke | 22 | -93/+949 | |
Improve and update docs | |||||
2020-10-26 | Small editorial change | Johannes Ranke | 1 | -1/+1 | |
2020-10-26 | Put the legend in its own area for plot.nlme.mmkin | Johannes Ranke | 21 | -115/+121 | |
2020-10-26 | Fix another bug in plot.nlme.mmkin | Johannes Ranke | 1 | -1/+2 | |
2020-10-26 | Fix a bug in plot.nlme.mmkin | Johannes Ranke | 1 | -1/+3 | |
2020-10-24 | Fix a bug for nlme with parent only, improve examples | Johannes Ranke | 13 | -150/+32 | |
2020-10-24 | Improve plot layout | Johannes Ranke | 6 | -61/+23 | |
2020-10-24 | Plot method for nlme.mmkin objects | Johannes Ranke | 20 | -189/+624 | |
Update docs | |||||
2020-10-24 | Printing method for mmkin objects | Johannes Ranke | 3 | -8/+53 | |
2020-10-22 | Really fix check for nlme::varConstProp | Johannes Ranke | 4 | -6/+53 | |
And add output for nlme fit translating the mkinfit error model "obs" into nlme::varIdent(). | |||||
2020-10-22 | Fix check for nlme::varConstProp | Johannes Ranke | 2 | -1/+1 | |
2020-10-22 | Try 2 to make travis use nlme from my drat repo | Johannes Ranke | 1 | -1/+3 | |
2020-10-22 | Update pkgdown docs | Johannes Ranke | 22 | -113/+201 | |
2020-10-22 | Improve interface to experimental version of nlme | Johannes Ranke | 9 | -24/+158 | |
The experimental nlme version in my drat repository contains the variance function structure varConstProp which makes it possible to use the two-component error model in generalized nonlinear models using nlme::gnls() and in mixed effects models using nlme::nlme(). | |||||
2020-10-15 | More gentle example for saemix with combined error model | Johannes Ranke | 11 | -49/+47 | |
2020-10-15 | Get current nlme version from CRAN on Travis | Johannes Ranke | 3 | -3/+6 | |
Also commit the dontrun instruction for saemix I had wanted to commit and switch back to devel mode for pkgdown | |||||
2020-10-15 | Don't run saemix examples on travis for now | Johannes Ranke | 1 | -1/+2 | |
2020-10-15 | Update online docs for release version | Johannes Ranke | 142 | -2297/+2727 | |
2020-10-15 | Updating docs of current dev version | Johannes Ranke | 36 | -156/+522 | |
2020-10-15 | Use my saemix repo for travis | Johannes Ranke | 1 | -1/+1 | |
The official repo is not installable at the moment | |||||
2020-10-15 | Reintroduce saemix helper functions | Johannes Ranke | 10 | -47/+273 | |
2020-10-08 | saemix dev version is not installable at the moment | Johannes Ranke | 1 | -2/+0 | |
2020-10-08 | Fix another URL, add devcheck targetv0.9.50.3 | Johannes Ranke | 11 | -11/+85 | |
2020-10-08 | Fix issues for release | Johannes Ranke | 92 | -1670/+1285 | |
2020-10-08 | Avoid dep on dev version of saemix for release | Johannes Ranke | 3 | -139/+3 | |
2020-09-10 | Regenerate docs with current roxygen | Johannes Ranke | 3 | -4/+6 | |
2020-09-01 | Merge branch 'master' of kolab.jrwb.de:mkin | Johannes Ranke | 3 | -31/+1 | |
2020-09-01 | Back-calculated DT50 values for biphasic models | Johannes Ranke | 2 | -1/+12 | |
2020-07-20 | Require upcoming nlme version, remove anova.nlme.mmkin | Johannes Ranke | 3 | -31/+1 | |
The method is no longer necessary, now that Bug 17761 is fixed upstream https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 | |||||
2020-07-17 | mkinfit: Ignore unused components of state.ini | Johannes Ranke | 5 | -6/+20 | |
2020-07-15 | Bump date to trigger Travis build after clearing cache | Johannes Ranke | 1 | -1/+1 | |
2020-07-15 | Merge branch 'master' of kolab.jrwb.de:mkin | Johannes Ranke | 0 | -0/+0 | |
2020-07-15 | Improve tests | Johannes Ranke | 5 | -49/+90 | |
- Reduce significant digits for the objective function output in mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis | |||||
2020-07-15 | Improve tests | Johannes Ranke | 5 | -49/+90 | |
- Reduce significant digits for mkinfit(..., quiet = TRUE) as R and R-devel were different on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis | |||||
2020-07-15 | Improve handling of (partially) failing fits | Johannes Ranke | 6 | -31/+48 | |
2020-07-15 | Use try() within mmkin | Johannes Ranke | 1 | -1/+1 | |
This keeps mmkin from stopping if one of the fits fails. Instead, a try-error is assigned to the respective position in the mmkin object. | |||||
2020-06-15 | vdiffr dev version not really necessary | Johannes Ranke | 1 | -1/+0 | |
2020-06-15 | Test plots on r-devel only | Johannes Ranke | 21 | -237/+252 | |
following the arguments of Xavier Robin https://github.com/r-lib/vdiffr/issues/86#issuecomment-636447231 | |||||
2020-06-15 | Use current devel version of vdiffr on Travis | Johannes Ranke | 1 | -1/+3 | |
2020-06-15 | Fix a bug, update for current vdiffr | Johannes Ranke | 7 | -118/+17 | |
Vignette FOCUS_L failed as I had introduced a bug in the handling of warnings. Current vdiffr only runs visual tests if R < 4.1.0, skipping r-devel for now, see https://github.com/r-lib/vdiffr/commit/630a29d013361fd63fea242f531e2db6aef37919 | |||||
2020-05-29 | Improve handling of warnings, reorganize tests | Johannes Ranke | 14 | -166/+354 | |
2020-05-29 | Warn if standardized residuals are unlikely normal | Johannes Ranke | 14 | -152/+131 | |
This revealed a bug in the data returned in mkinfit$data in the case of the d_3 algorithm, which also affected the residual plot - the data from the direct fitting was not returned even if this was the better method. | |||||
2020-05-28 | use_of_ff = "max" for shorthand models like "SFO" | Johannes Ranke | 9 | -33/+35 | |
2020-05-27 | Improve mkinmod docs | Johannes Ranke | 4 | -85/+135 | |
2020-05-27 | Change dev version label to info color | Johannes Ranke | 26 | -94/+95 | |
instead of the orange danger color. | |||||
2020-05-27 | Advertise docs of the dev version | Johannes Ranke | 2 | -13/+14 | |