Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2020-12-17 | Another attempt to install saemixextension from my branch | Johannes Ranke | 1 | -1/+1 | |
2020-12-17 | nlme with varConstProp has been published | Johannes Ranke | 1 | -4/+1 | |
so no need to explicitly install it on Travis any more But as I reset my master branch of saemixextension to upstream we need my jr branch with the silent logLik method | |||||
2020-12-17 | Some package switched from git2r to gert | Johannes Ranke | 1 | -0/+1 | |
so we need libgit2-dev on the system | |||||
2020-12-16 | And add the second candidate model | Johannes Ranke | 4 | -1/+30 | |
2020-12-16 | and update docs | Johannes Ranke | 4 | -22/+19 | |
2020-12-16 | Print the model not the data for D24 | Johannes Ranke | 1 | -1/+1 | |
2020-12-16 | Add printout of d24 model and update docs | Johannes Ranke | 12 | -30/+49 | |
2020-12-15 | Remove leftovers | Johannes Ranke | 1 | -3/+2 | |
2020-12-11 | Update README for cgit.jrwb.de | Johannes Ranke | 1 | -6/+54 | |
2020-12-11 | Update static docs | Johannes Ranke | 19 | -137/+406 | |
2020-12-10 | nlme with varConstProp is released | Johannes Ranke | 2 | -2/+5 | |
Also fix incompatibility with saem fits from earlier mkin versions | |||||
2020-12-10 | Tried to find a fast test for deSolve in saemix | Johannes Ranke | 2 | -2/+7 | |
But could not find one. | |||||
2020-12-10 | Add a test for saemix with deSolve | Johannes Ranke | 3 | -17/+32 | |
But skip the test as it takes too long to always run | |||||
2020-12-09 | Make saem using mkinpredict work again | Johannes Ranke | 4 | -67/+78 | |
I threw out mclapply as it did not play well with the linear algebra routines used in the saemix code. Most of the change is actually indentation in the code creating the model function. But there is an important fix in mkinpredict which I had broken. | |||||
2020-12-09 | Some test fixes | Johannes Ranke | 4 | -44/+11 | |
2020-12-09 | Add more tests and fix HS in saem | Johannes Ranke | 6 | -1224/+1318 | |
2020-12-09 | Fix a test I accidentally broke | Johannes Ranke | 2 | -18/+13 | |
2020-12-09 | And more | Johannes Ranke | 3 | -1/+16 | |
2020-12-09 | Any yet more tests | Johannes Ranke | 5 | -17/+36 | |
2020-12-09 | Update test output and reduce precision for travis | Johannes Ranke | 4 | -27/+27 | |
2020-12-09 | More tests | Johannes Ranke | 10 | -2613/+1533 | |
2020-12-09 | Try other mixed fits for vdiffr on travis | Johannes Ranke | 4 | -4810/+1290 | |
2020-12-09 | Test print method for mixed.mmkin | Johannes Ranke | 4 | -4/+34 | |
2020-12-09 | Make tests more robust, remove two redundant ones | Johannes Ranke | 4 | -44/+22 | |
2020-12-09 | Fix tests and rerun | Johannes Ranke | 5 | -111/+98 | |
2020-12-09 | Some more tests that may work on travis now | Johannes Ranke | 2 | -27/+28 | |
2020-12-09 | Some more tests | Johannes Ranke | 6 | -69/+196 | |
2020-12-09 | Don't test on devel, skip failing vdiffr tests | Johannes Ranke | 2 | -2/+1 | |
I can test on R-devel locally for preparing releases | |||||
2020-12-08 | Test plots on R-release and cache packages again | Johannes Ranke | 24 | -3138/+3139 | |
2020-12-08 | Do not cache packages | Johannes Ranke | 1 | -2/+0 | |
2020-12-08 | Install svglite from github on travis | Johannes Ranke | 1 | -0/+1 | |
2020-12-08 | Try to figure out while vdiffr fails | Johannes Ranke | 1 | -4/+4 | |
2020-12-08 | mixed.mmkin and test coverage | Johannes Ranke | 24 | -88/+10487 | |
2020-12-07 | Updates after inline 0.3.17 has been released | Johannes Ranke | 2 | -2/+2 | |
2020-12-07 | Possibility to use saemix transformations in some cases | Johannes Ranke | 1 | -45/+127 | |
Namely for SFO, DFOP, SFO-SFO and DFOP-SFO | |||||
2020-12-07 | Attempt to be more failsafe in saemix runs | Johannes Ranke | 1 | -2/+8 | |
2020-12-03 | Small doc improvement | Johannes Ranke | 1 | -2/+2 | |
2020-12-02 | Possibility to specify random effects structures | Johannes Ranke | 4 | -40/+33 | |
The default is pdDiag again, as we often have a small number of datasets in degradation kinetics. | |||||
2020-11-30 | Complete rebuild of static docs of dev version | Johannes Ranke | 120 | -2656/+957 | |
2020-11-30 | Log-Cholesky parameterisation as default in nlme.mmkin | Johannes Ranke | 9 | -58/+86 | |
2020-11-27 | Update static docs | Johannes Ranke | 4 | -6/+7 | |
2020-11-27 | Merge branch 'saving_compiled_code' | Johannes Ranke | 7 | -67/+137 | |
2020-11-27 | Closes #11 | Johannes Ranke | 1 | -0/+2 | |
2020-11-27 | Improved way to have persistent DLLs for mkinmod | Johannes Ranke | 7 | -51/+67 | |
Depends on inline >= 0.16.2 (including the bug fixes from eddelbuettel/inline#18), which provides 'moveDLL' to store the DLL for a compiled function in a safe place in case the argument 'dll_dir' is specified in the call to 'mkinmod'. Huge thanks to Dirk @eddelbuettel for his review and support for the work on the inline package. | |||||
2020-11-24 | Support storing mkinmod compiled code as CFunc objects | Johannes Ranke | 8 | -66/+120 | |
With automatic reloading in mkinfit and mkinpredict in case the DLL is not loaded and the original DLL path has been cleaned up. Depends on jranke/inline@974bdea04fcedfafaab231e6f359c88270b56cb9 See inline#13 | |||||
2020-11-20 | export create_deg_func | Johannes Ranke | 2 | -0/+2 | |
2020-11-19 | Update tests, improve CAKE_export test | Johannes Ranke | 4 | -24/+25 | |
2020-11-19 | Depend on parallel, doc improvements | Johannes Ranke | 144 | -1572/+3637 | |
By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9. | |||||
2020-11-13 | More work on f_time_norm_focus | Johannes Ranke | 4 | -11/+22 | |
2020-11-13 | Fixes for f_time_norm_focus, still very fragile... | Johannes Ranke | 4 | -18/+49 | |