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2022-11-04Make it easy to override maxsteps for lsodaJohannes Ranke2-38/+44
The hope was to be more successful in saemix fits, but I did not notice an improvement (e.g. for a failing likelihood calculation with importance sampling, where the error message suggested to increase maxsteps).
2022-11-04Make illparms.mhmkin and anova.saem.mmkin more robustJohannes Ranke3-12/+14
2022-11-04Never fail with errors in saem.mmkinJohannes Ranke3-18/+2
I think it is always preferable to be able to investigate the saemix object returned.
2022-11-03Update for cgit...Johannes Ranke1-1/+1
2022-11-03Update docsJohannes Ranke8-2/+337
2022-11-01Add tex_listing()Johannes Ranke5-1/+58
2022-11-01Add read_spreadsheetJohannes Ranke5-2/+171
2022-11-01Update online docsJohannes Ranke30-176/+275
2022-11-01Fix plotting saem fits with covariatesJohannes Ranke7-58/+94
2022-11-01Fix a bug, couldn't set class attribute on NULLJohannes Ranke1-1/+1
2022-11-01Fix illparms testsJohannes Ranke5-51/+18
2022-11-01Improved printing for illparms()Johannes Ranke7-24/+80
For the case of single fits and no ill-defined parameters found
2022-10-31Fix R CMD checkJohannes Ranke7-17/+32
2022-10-31Possibility to override the error model in update.saemJohannes Ranke2-11/+14
2022-10-31Add anova.mhmkin methodJohannes Ranke2-0/+18
2022-10-30Correct documentation of sorting in anova.saem.mmkin()Johannes Ranke1-3/+4
2022-10-30saem summary in case of non-invertible FIM partsJohannes Ranke1-7/+13
2022-10-29Another attempt to make the test robustJohannes Ranke4-20/+44
As the last update failed on travis. Now we should be more robust, as rounding to one digit works better when parameters are log-transformed (mkin transformations) in the output.
2022-10-29Make test independent of saemix error model parameter patchJohannes Ranke2-4/+3
As mentioned in d44c17da6d62568b
2022-10-29Next version will be 1.2.0, complete NEWSJohannes Ranke2-8/+8
2022-10-29Merge branch 'update_online_docs_v1.1.1'Johannes Ranke1-56/+62
2022-10-29Rebuild vignette with rbenchmark installedJohannes Ranke1-56/+62
2022-10-29Update multistart docsJohannes Ranke21-31/+382
2022-10-28Rename parhist to parplot and make it genericJohannes Ranke16-51/+63
That parhist name was not the brightest idea, as it does not show histograms.
2022-10-28Export status method for mhmkin, move to status.RJohannes Ranke5-59/+70
2022-10-28Update test to renamed methodJohannes Ranke2-14/+14
2022-10-28Rename 'convergence' method to 'status'Johannes Ranke9-75/+71
The reason is that it is misleading in the case of saem.mmkin objects, because convergence is not really checked there.
2022-10-26Really test anova output, test covariatesJohannes Ranke5-52/+38
2022-10-26We don't use KernSmooth any moreJohannes Ranke1-2/+1
2022-10-26Update multistart example code and vignetteJohannes Ranke16-63/+137
2022-10-26Don't test parhist and llhist on travis, docsJohannes Ranke18-73/+741
2022-10-26Reduced sfo model for multistart.saem.mkin testsJohannes Ranke6-45/+147
2022-10-26Remove kernel density estimate from llhistJohannes Ranke7-47/+112
2022-10-26Skip llhist and parhist tests as platform dependentJohannes Ranke1-0/+1
2022-10-26Try to make multistart (more) reproducibleJohannes Ranke4-152/+148
2022-10-26Tests pass locallyJohannes Ranke1-21/+19
2022-10-26Make multistart work with testthat scopesJohannes Ranke7-18/+301
Also skip long-running test with saem using the analytical from mkin
2022-10-25Test multistart methodJohannes Ranke2-0/+19
2022-10-25Round also for nlme print method...Johannes Ranke2-7/+8
2022-10-25Increase rounding in test for travisJohannes Ranke2-2/+2
As the "const" error model parameters is stored on log scale in nlme
2022-10-25Explanatory commentJohannes Ranke1-0/+1
2022-10-25Avoid another platform dependenceJohannes Ranke2-2/+7
Caused by the fact that printing error model parameters in nlme summaries do not honor the digits argument.
2022-10-25Change DFOP mixed model data in tests, updatesJohannes Ranke9-1282/+1298
2022-10-25Address platform dependencies that surfaced on travisJohannes Ranke2-5/+10
2022-10-25Another attempt to restore coverage on codecovJohannes Ranke1-2/+3
2022-10-25Install covr on travis to restore codecov coverageJohannes Ranke1-1/+1
2022-10-25Complete documentation and fix a bugJohannes Ranke11-29/+69
The bug was introduced by the changes in summary.saem.mmkin.R and surfaced in the tests when using saemix transformations.
2022-10-25Revert accidental changeJohannes Ranke1-21/+27
2022-10-21Explain chisq tests in anovaJohannes Ranke1-1/+2
Now that I understand how anova.lmer from which I ported the code produces mostly meaningful likelihood ratio tests in the table.
2022-10-21Adapt summary.saem.mmkin to covariate modelsJohannes Ranke1-7/+6
Dissipation times are calculated for covariate values of zero currently, which will usually not be very useful.

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