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2020-10-24Plot method for nlme.mmkin objectsJohannes Ranke20-189/+624
Update docs
2020-10-24Printing method for mmkin objectsJohannes Ranke3-8/+53
2020-10-22Really fix check for nlme::varConstPropJohannes Ranke4-6/+53
And add output for nlme fit translating the mkinfit error model "obs" into nlme::varIdent().
2020-10-22Fix check for nlme::varConstPropJohannes Ranke2-1/+1
2020-10-22Try 2 to make travis use nlme from my drat repoJohannes Ranke1-1/+3
2020-10-22Update pkgdown docsJohannes Ranke22-113/+201
2020-10-22Improve interface to experimental version of nlmeJohannes Ranke9-24/+158
The experimental nlme version in my drat repository contains the variance function structure varConstProp which makes it possible to use the two-component error model in generalized nonlinear models using nlme::gnls() and in mixed effects models using nlme::nlme().
2020-10-15More gentle example for saemix with combined error modelJohannes Ranke11-49/+47
2020-10-15Get current nlme version from CRAN on TravisJohannes Ranke3-3/+6
Also commit the dontrun instruction for saemix I had wanted to commit and switch back to devel mode for pkgdown
2020-10-15Don't run saemix examples on travis for nowJohannes Ranke1-1/+2
2020-10-15Update online docs for release versionJohannes Ranke142-2297/+2727
2020-10-15Updating docs of current dev versionJohannes Ranke36-156/+522
2020-10-15Use my saemix repo for travisJohannes Ranke1-1/+1
The official repo is not installable at the moment
2020-10-15Reintroduce saemix helper functionsJohannes Ranke10-47/+273
2020-10-08saemix dev version is not installable at the momentJohannes Ranke1-2/+0
2020-10-08Fix another URL, add devcheck targetv0.9.50.3Johannes Ranke11-11/+85
2020-10-08Fix issues for releaseJohannes Ranke92-1670/+1285
2020-10-08Avoid dep on dev version of saemix for releaseJohannes Ranke3-139/+3
2020-09-10Regenerate docs with current roxygenJohannes Ranke3-4/+6
2020-09-01Merge branch 'master' of kolab.jrwb.de:mkinJohannes Ranke3-31/+1
2020-09-01Back-calculated DT50 values for biphasic modelsJohannes Ranke2-1/+12
2020-07-20Require upcoming nlme version, remove anova.nlme.mmkinJohannes Ranke3-31/+1
The method is no longer necessary, now that Bug 17761 is fixed upstream https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761
2020-07-17mkinfit: Ignore unused components of state.iniJohannes Ranke5-6/+20
2020-07-15Bump date to trigger Travis build after clearing cacheJohannes Ranke1-1/+1
2020-07-15Merge branch 'master' of kolab.jrwb.de:mkinJohannes Ranke0-0/+0
2020-07-15Improve testsJohannes Ranke5-49/+90
- Reduce significant digits for the objective function output in mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis
2020-07-15Improve testsJohannes Ranke5-49/+90
- Reduce significant digits for mkinfit(..., quiet = TRUE) as R and R-devel were different on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis
2020-07-15Improve handling of (partially) failing fitsJohannes Ranke6-31/+48
2020-07-15Use try() within mmkinJohannes Ranke1-1/+1
This keeps mmkin from stopping if one of the fits fails. Instead, a try-error is assigned to the respective position in the mmkin object.
2020-06-15vdiffr dev version not really necessaryJohannes Ranke1-1/+0
2020-06-15Test plots on r-devel onlyJohannes Ranke21-237/+252
following the arguments of Xavier Robin https://github.com/r-lib/vdiffr/issues/86#issuecomment-636447231
2020-06-15Use current devel version of vdiffr on TravisJohannes Ranke1-1/+3
2020-06-15Fix a bug, update for current vdiffrJohannes Ranke7-118/+17
Vignette FOCUS_L failed as I had introduced a bug in the handling of warnings. Current vdiffr only runs visual tests if R < 4.1.0, skipping r-devel for now, see https://github.com/r-lib/vdiffr/commit/630a29d013361fd63fea242f531e2db6aef37919
2020-05-29Improve handling of warnings, reorganize testsJohannes Ranke14-166/+354
2020-05-29Warn if standardized residuals are unlikely normalJohannes Ranke14-152/+131
This revealed a bug in the data returned in mkinfit$data in the case of the d_3 algorithm, which also affected the residual plot - the data from the direct fitting was not returned even if this was the better method.
2020-05-28use_of_ff = "max" for shorthand models like "SFO"Johannes Ranke9-33/+35
2020-05-27Improve mkinmod docsJohannes Ranke4-85/+135
2020-05-27Change dev version label to info colorJohannes Ranke26-94/+95
instead of the orange danger color.
2020-05-27Advertise docs of the dev versionJohannes Ranke2-13/+14
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke63-1348/+660
2020-05-27Create up to date pkgdown docs in development modeJohannes Ranke187-1/+24660
2020-05-26Use all cores per default, confint toleranceJohannes Ranke29-405/+466
Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits.
2020-05-26Use upstream saemix for travisJohannes Ranke1-1/+1
The necessary change has been merged
2020-05-25Tell travis where to really find the saemix version...Johannes Ranke1-1/+1
2020-05-25Tell travis where to find the required saemix versionJohannes Ranke5-14/+14
2020-05-25First working version of saemix helper functionsJohannes Ranke20-26/+694
saemix_data depends on a development version of saemix, see pull request saemixdevelopment/saemixextension#2
2020-05-18Add commentJohannes Ranke1-1/+2
2020-05-15Improve docsJohannes Ranke2-23/+15
2020-05-15Use markdown links in mkinfit documentationJohannes Ranke4-95/+97
2020-05-14Update version number, better example formattingJohannes Ranke11-38/+35

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