| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2015-07-21 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-40 | Johannes Ranke | 1 | -1/+1 | |
| r-forge | |||||
| 2015-07-20 | Remove obvious CRAN URL | Johannes Ranke | 1 | -3/+2 | |
| 2015-07-20 | Avoid error message for SFORB in endpoints, updates | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-30 | Improve calculation of DT90 in endpoints(), check and test | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-29 | Bump version, as 0.9-39 is now on CRAN | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-25 | Depend on parallel package, todays date | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-23 | Version bump, keep logs of build, check and test | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-23 | Remove Rplots.pdf that is being built by staticdocs | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-23 | Set the correct date in DESCRIPTION | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-22 | Version bump, correct benchmark in vignette/compiled_models | Johannes Ranke | 1 | -2/+2 | |
| Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed. | |||||
| 2015-06-21 | Do the t-test for untransformed parametersv0.9-36 | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-20 | Low-level generation of compiled models | Johannes Ranke | 1 | -5/+4 | |
| As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. | |||||
| 2015-05-18 | Make checking faster, testing is done by tests | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Clean up meta information | Johannes Ranke | 1 | -3/+4 | |
| 2015-05-15 | Merge branch 'master' into compile_odes | Johannes Ranke | 1 | -3/+3 | |
| Conflicts (resolved manually, deleting code that I had integrated into the RUnit tests for testing the compiled version): .gitignore DESCRIPTION inst/unitTests/runit.mkinerrmin.R inst/unitTests/runit.mkinfit.R tests/testthat/test_mkinpredict_SFO_SFO.R vignettes/FOCUS_L.html | |||||
| 2015-05-15 | Quote FME package name in DESCRIPTION | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Correct the date | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Finished migration from RUnit to testthat | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-14 | Start of migration from RUnit to testthat | Johannes Ranke | 1 | -2/+3 | |
| 2015-04-18 | Add a vignette showing the performance of compiled models | Johannes Ranke | 1 | -1/+1 | |
| 2015-04-17 | Add NEWS about compiled models, set the date | Johannes Ranke | 1 | -1/+1 | |
| 2015-04-14 | Compile differential equation models with ccSolve package | Johannes Ranke | 1 | -2/+4 | |
| If the ccSolve package is available, and time is not in the right hand side of the equations (i.e. if only SFO and SFORB models are used), the differential equation model is compiled from auto-generated C code. Currently, one test (FOCUS 2006 D SFO_SFO) fails | |||||
| 2015-02-20 | Add termination message to mkinfit, prepare release | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-23 | Avoid spurious warning in mkinparplot, bump version | Johannes Ranke | 1 | -2/+2 | |
| 2014-11-21 | Update date and static docs for release to CRANv0.9-34 | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-13 | Update the date | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-22 | Always include 0 on y axis when plotting during the fit | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-15 | Switch to using the Port algorithm per default | Johannes Ranke | 1 | -4/+4 | |
| 2014-10-14 | Further formatting improvement for differential equations | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-12 | Use title case for the title | Johannes Ranke | 1 | -2/+2 | |
| Tried to adhere to the Chicago Manual of Style, but am not sure about "with". | |||||
| 2014-10-11 | Start new development version | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-11 | Updates intended for releasing mkin 0.9-33 | Johannes Ranke | 1 | -1/+1 | |
| 2014-08-20 | Fix mkinfit for a special situation | Johannes Ranke | 1 | -1/+1 | |
| See NEWS.md: When the parent was not the (only) variable with the highest value out of all variables in the observed data, it could happen that the initial value (state.ini) was not initialised. | |||||
| 2014-08-19 | Improve formatting of differential equations in output | Johannes Ranke | 1 | -2/+3 | |
| Rebuild of FOCUS_Z vignette with improved formatting | |||||
| 2014-07-25 | Fix internal naming of g for transform_fractions=FALSE | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-24 | Bump version, better default for state.ini | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-24 | Avoid artificial zero residual in mkinresplot | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-23 | Parallel metabolite formation with formation fractions in mkinerrmin | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-21 | Bugfix, model shorthand, state.ini[[1]] from observed data | Johannes Ranke | 1 | -1/+1 | |
| - The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes | |||||
| 2014-07-17 | Handle non-convergence and maximum number of iterations | Johannes Ranke | 1 | -1/+1 | |
| For details see NEWS.md | |||||
| 2014-07-14 | Bump version as 0.9-31 was released today | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-14 | Bugfix release version 0.9-31 | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-11 | It is B. Mikolasch, not M. Mikolasch... | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-11 | Update the date | Johannes Ranke | 1 | -1/+1 | |
| 2014-06-27 | Bump version as mkin 0.9-29 was just released | Johannes Ranke | 1 | -1/+1 | |
| 2014-06-26 | Start new version, add xlim to mkinresplot | Johannes Ranke | 1 | -2/+2 | |
| 2014-05-20 | Step back regarding confidence intervals of formation fractions | Johannes Ranke | 1 | -1/+1 | |
| - Don't give confidence intervals for formation fractions that belong to a set, only for single formation fractions - Update the vignette with history and background - Correct 'isotropic' into 'isometric' in the ilr documentation, the README and the comments in transform_odeparms - Candidate for release to CRAN | |||||
| 2014-05-15 | Start new version number, Fix #5 (Inf values in mkinparplot) | Johannes Ranke | 1 | -2/+2 | |
| 2014-05-09 | Update the date | Johannes Ranke | 1 | -1/+1 | |
| 2014-05-08 | Reorder URLs | Johannes Ranke | 1 | -1/+2 | |
 |
index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
| aboutsummaryrefslogtreecommitdiff |
path: root/DESCRIPTION