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2018-01-05Experimental test data from UBA 2014 expertiseJohannes Ranke1-2/+2
- Typo in synthetic data for UBA - Static documentation except articles rebuilt by pkgdown
2017-11-16Add the code used for generating synthetic_data_for_UBAJohannes Ranke1-2/+2
Static documentation except articles rebuilt by pkgdown
2017-11-10Delete trailing whitespace, update README.htmlJohannes Ranke1-2/+2
2017-10-10Add ORCID to DESCRIPTION, released versionv0.9.46.2Johannes Ranke1-2/+3
Static documentation except articles rebuilt by pkgdown
2017-09-18Change Depends to ImportsJohannes Ranke1-2/+2
as recommended, e.g. by Uwe Ligges in his useR! 2017 keynote
2017-09-14Convert FOCUS Z vignette to rmarkdown/htmlJohannes Ranke1-2/+2
- Static documentation rebuilt by pkgdown::build_articles() - DESCRIPTION: Version bump and current date
2017-09-07Update Date in DESCRIPTION, last build logJohannes Ranke1-1/+1
2017-09-07Static documentation except articles rebuilt by pkgdownJohannes Ranke1-1/+1
2017-07-29Bump version, update NEWS and rebuild pkdown docsv0.9.46Johannes Ranke1-2/+2
2017-07-21Todays dateJohannes Ranke1-1/+1
2017-05-05Switch from microbenchmark to rbenchmarkJohannes Ranke1-3/+3
2016-12-21TWA calculation for SFO, FOMC and DFOP (parent)Johannes Ranke1-2/+2
2016-12-08Prepare for releaseJohannes Ranke1-2/+2
2016-12-07Use latex in plots when using tikzDeviceJohannes Ranke1-1/+1
2016-11-04Use github URL againJohannes Ranke1-1/+1
2016-11-04Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-1/+1
With updated pkgdown with my PR
2016-11-03Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-2/+1
Using pkgdown with PR hadley/pkgdown#212
2016-09-10Plot using R model if compiled model is not availableJohannes Ranke1-2/+2
2016-06-28Bump version for new release, rebuild static docsJohannes Ranke1-1/+1
The test test_FOMC_ill-defined leads to errors on several architectures/distributions, as apparent from CRAN checks, so we need a new release. Static documentation rebuilt by staticdocs::build_site()
2016-06-28Bump version after release to CRANJohannes Ranke1-1/+1
2016-06-28Avoid multicore fits in vignettes for passing CRAN checksJohannes Ranke1-1/+1
Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs.
2016-06-28Convenience wrapper plot_sep, further vignette updatesJohannes Ranke1-1/+1
2016-06-27Bump version for publication, update staticdocsJohannes Ranke1-2/+2
2016-06-24Convert main vignette to Rmd/html, add_err(), fixesJohannes Ranke1-1/+1
2016-06-17Change the title of the package, small bugfixJohannes Ranke1-11/+10
2016-06-09Fix a bug in the listing of formation fractionsJohannes Ranke1-1/+1
The bug could only occur if a parent compound with a metabolite would end in the letter 'f' and was therefore not noticed earlier
2016-04-21Avoid unnecessary stop in edge case, improve warningsJohannes Ranke1-1/+1
mkinfit: Do not error out in cases where the fit converges, but the Jacobian for the untransformed model cost can not be estimated. Give a warning instead and return NA for the t-test results. summary.mkinfit: Give a warning message when the covariance matrix can not be obtained. A test has been added to containing such an edge case to check that the warnings are correctly issued and the fit does not terminate.
2016-03-25Remove outdated reference to the inline packageJohannes Ranke1-2/+2
2016-03-24Address feedback from CRAN submissionJohannes Ranke1-1/+1
- Put the CRAN URL that the badge points to into canonical form. I had missed the requirement to use the canonical form before, as the R CMD check message complained about a (possibily) invalid URL, so I overlooked the explanation later in the check log. Thanks to Uwe for his patience. Fix checked with winbuilder. - Slightly reduced the build time for the compiled_models vignette by skipping the warm-up. 3 repetitions are necessary for the autoplot method to work
2016-03-23Added 'from_max_mean' to 'mkinfit'.Johannes Ranke1-2/+2
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel
2015-11-13Add plots to compiled_models vignette, rebuild staticdocsJohannes Ranke1-2/+2
2015-11-13Bump version, change to version number format as shown in summariesJohannes Ranke1-1/+1
2015-11-09Export print.mkinds and rebuild vignettesJohannes Ranke1-2/+2
2015-10-19Add the R6 class mkindsJohannes Ranke1-1/+1
2015-10-19Add a print method for mkinmod objectsJohannes Ranke1-1/+1
2015-10-16Full compound names in models that are shown in the plotJohannes Ranke1-1/+1
2015-07-22Increment version number for developmentJohannes Ranke1-2/+2
2015-07-21Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-40Johannes Ranke1-1/+1
r-forge
2015-07-20Remove obvious CRAN URLJohannes Ranke1-3/+2
2015-07-20Avoid error message for SFORB in endpoints, updatesJohannes Ranke1-1/+1
2015-06-30Improve calculation of DT90 in endpoints(), check and testJohannes Ranke1-2/+2
2015-06-29Bump version, as 0.9-39 is now on CRANJohannes Ranke1-2/+2
2015-06-25Depend on parallel package, todays dateJohannes Ranke1-2/+2
2015-06-23Version bump, keep logs of build, check and testJohannes Ranke1-1/+1
2015-06-23Remove Rplots.pdf that is being built by staticdocsJohannes Ranke1-1/+1
2015-06-23Set the correct date in DESCRIPTIONJohannes Ranke1-1/+1
2015-06-22Version bump, correct benchmark in vignette/compiled_modelsJohannes Ranke1-2/+2
Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed.
2015-06-21Do the t-test for untransformed parametersv0.9-36Johannes Ranke1-2/+2
2015-06-20Low-level generation of compiled modelsJohannes Ranke1-5/+4
As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled.
2015-05-18Make checking faster, testing is done by testsJohannes Ranke1-1/+1

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