| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2015-05-15 | Merge branch 'master' into compile_odes | Johannes Ranke | 1 | -3/+3 | |
| Conflicts (resolved manually, deleting code that I had integrated into the RUnit tests for testing the compiled version): .gitignore DESCRIPTION inst/unitTests/runit.mkinerrmin.R inst/unitTests/runit.mkinfit.R tests/testthat/test_mkinpredict_SFO_SFO.R vignettes/FOCUS_L.html | |||||
| 2015-05-15 | Quote FME package name in DESCRIPTION | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Correct the date | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Finished migration from RUnit to testthat | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-14 | Start of migration from RUnit to testthat | Johannes Ranke | 1 | -2/+3 | |
| 2015-04-18 | Add a vignette showing the performance of compiled models | Johannes Ranke | 1 | -1/+1 | |
| 2015-04-17 | Add NEWS about compiled models, set the date | Johannes Ranke | 1 | -1/+1 | |
| 2015-04-14 | Compile differential equation models with ccSolve package | Johannes Ranke | 1 | -2/+4 | |
| If the ccSolve package is available, and time is not in the right hand side of the equations (i.e. if only SFO and SFORB models are used), the differential equation model is compiled from auto-generated C code. Currently, one test (FOCUS 2006 D SFO_SFO) fails | |||||
| 2015-02-20 | Add termination message to mkinfit, prepare release | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-23 | Avoid spurious warning in mkinparplot, bump version | Johannes Ranke | 1 | -2/+2 | |
| 2014-11-21 | Update date and static docs for release to CRANv0.9-34 | Johannes Ranke | 1 | -1/+1 | |
| 2014-11-13 | Update the date | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-22 | Always include 0 on y axis when plotting during the fit | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-15 | Switch to using the Port algorithm per default | Johannes Ranke | 1 | -4/+4 | |
| 2014-10-14 | Further formatting improvement for differential equations | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-12 | Use title case for the title | Johannes Ranke | 1 | -2/+2 | |
| Tried to adhere to the Chicago Manual of Style, but am not sure about "with". | |||||
| 2014-10-11 | Start new development version | Johannes Ranke | 1 | -1/+1 | |
| 2014-10-11 | Updates intended for releasing mkin 0.9-33 | Johannes Ranke | 1 | -1/+1 | |
| 2014-08-20 | Fix mkinfit for a special situation | Johannes Ranke | 1 | -1/+1 | |
| See NEWS.md: When the parent was not the (only) variable with the highest value out of all variables in the observed data, it could happen that the initial value (state.ini) was not initialised. | |||||
| 2014-08-19 | Improve formatting of differential equations in output | Johannes Ranke | 1 | -2/+3 | |
| Rebuild of FOCUS_Z vignette with improved formatting | |||||
| 2014-07-25 | Fix internal naming of g for transform_fractions=FALSE | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-24 | Bump version, better default for state.ini | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-24 | Avoid artificial zero residual in mkinresplot | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-23 | Parallel metabolite formation with formation fractions in mkinerrmin | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-21 | Bugfix, model shorthand, state.ini[[1]] from observed data | Johannes Ranke | 1 | -1/+1 | |
| - The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes | |||||
| 2014-07-17 | Handle non-convergence and maximum number of iterations | Johannes Ranke | 1 | -1/+1 | |
| For details see NEWS.md | |||||
| 2014-07-14 | Bump version as 0.9-31 was released today | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-14 | Bugfix release version 0.9-31 | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-11 | It is B. Mikolasch, not M. Mikolasch... | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-11 | Update the date | Johannes Ranke | 1 | -1/+1 | |
| 2014-06-27 | Bump version as mkin 0.9-29 was just released | Johannes Ranke | 1 | -1/+1 | |
| 2014-06-26 | Start new version, add xlim to mkinresplot | Johannes Ranke | 1 | -2/+2 | |
| 2014-05-20 | Step back regarding confidence intervals of formation fractions | Johannes Ranke | 1 | -1/+1 | |
| - Don't give confidence intervals for formation fractions that belong to a set, only for single formation fractions - Update the vignette with history and background - Correct 'isotropic' into 'isometric' in the ilr documentation, the README and the comments in transform_odeparms - Candidate for release to CRAN | |||||
| 2014-05-15 | Start new version number, Fix #5 (Inf values in mkinparplot) | Johannes Ranke | 1 | -2/+2 | |
| 2014-05-09 | Update the date | Johannes Ranke | 1 | -1/+1 | |
| 2014-05-08 | Reorder URLs | Johannes Ranke | 1 | -1/+2 | |
| 2014-05-07 | Bump version so gmkin can depend on a GUI-less version | Johannes Ranke | 1 | -1/+1 | |
| 2014-05-07 | Update for release to r-forge | Johannes Ranke | 1 | -1/+1 | |
| 2014-05-07 | Fork the GUI into package gmkin. See ChangeLog for details | Johannes Ranke | 1 | -3/+1 | |
| 2014-05-02 | Update of the FOCUS Z vignette, release candidate | Johannes Ranke | 1 | -1/+1 | |
| 2014-04-28 | Fix version, write ChangeLog | Johannes Ranke | 1 | -1/+1 | |
| 2014-04-28 | Bump version | Johannes Ranke | 1 | -2/+2 | |
| 2014-04-28 | Remove unused RSVGTipsDevice from suggested packages | Johannes Ranke | 1 | -1/+1 | |
| 2014-04-25 | McCall 2,4,5-T dataset, lower bound for transform_rates=FALSE | Johannes Ranke | 1 | -1/+1 | |
| 2014-04-22 | Possibility to fit without parameter transformation | Johannes Ranke | 1 | -2/+2 | |
| 2014-03-24 | Source of gWidgetsWWW2 package to comply with CRAN policy | Johannes Ranke | 1 | -1/+3 | |
| 2014-03-20 | Add copyright information and bugreport URL | Johannes Ranke | 1 | -3/+5 | |
| 2014-02-27 | Format of gmkin workspace files, copyright, updates | Johannes Ranke | 1 | -2/+3 | |
| - Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup | |||||
| 2014-01-22 | Merge branch 'master' of https://github.com/jranke/mkin | Johannes Ranke | 1 | -2/+2 | |
| Conflicts: DESCRIPTION R/mkinfit.R | |||||
| 2014-01-17 | - Use mkinmod$spec instead of mkinmod$map wherever possible, in order to ↵ | Johannes Ranke | 1 | -1/+1 | |
| make it possible to to modify mkinmod$map when the mapping of internal to observed variables should be changed. Note that such modifications will confuse plot.mkinfit and summary.mkinfit. Setting the class attribute to modFit makes summary.modFit useable in such a case | |||||
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index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
| aboutsummaryrefslogtreecommitdiff |
path: root/DESCRIPTION