| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2023-04-20 | Fix and rebuild documentation, see NEWS | Johannes Ranke | 1 | -2/+2 | |
| I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well. | |||||
| 2023-04-16 | Bump datev1.2.3 | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-15 | Update description and news | Johannes Ranke | 1 | -1/+1 | |
| 2023-04-06 | Check notes on winbuilder | Johannes Ranke | 1 | -2/+2 | |
| - The CRAN spell check does not like 'backend', using 'back end' now - URL updates in README | |||||
| 2023-04-02 | Bump date | Johannes Ranke | 1 | -1/+1 | |
| 2023-03-23 | Support covariates in endpoints() | Johannes Ranke | 1 | -1/+1 | |
| 2023-02-17 | Rethink versioning and remove 7950X benchmarks | Johannes Ranke | 1 | -1/+1 | |
| I will add benchmark data for 1.2.0, 1.2.2 and 1.2.3 for better comparison | |||||
| 2023-02-17 | Finish adapting to upcoming deSolve | Johannes Ranke | 1 | -1/+1 | |
| 2023-02-13 | WIP adapting to new deSolve with faster lsoda | Johannes Ranke | 1 | -1/+1 | |
| 2023-02-13 | Merge branch 'main' into custom_lsoda_call | Johannes Ranke | 1 | -9/+9 | |
| 2023-01-09 | Prebuilt PDF vignettes, summary_listing | Johannes Ranke | 1 | -1/+1 | |
| 2023-01-03 | Improved skeleton for hierarchical fits | Johannes Ranke | 1 | -7/+7 | |
| Now with working pathway fits using SFORB-SFO2 (only two parallel metabolites instead of three) as the data for compound Ia was not sufficient for a reliable fit. | |||||
| 2022-11-24 | Start online docs of the development version | Johannes Ranke | 1 | -1/+1 | |
| 2022-11-22 | Start new development version | Johannes Ranke | 1 | -2/+2 | |
| 2022-11-18 | Prepare follow-up release to fix CRAN checks | Johannes Ranke | 1 | -2/+2 | |
| 2022-11-16 | Update DESCRIPTION and NEWS, check and test | Johannes Ranke | 1 | -1/+1 | |
| 2022-11-16 | We get about 25% performance gain | Johannes Ranke | 1 | -4/+4 | |
| with the custom lsoda call, avoiding repeated getNativeSymbolInfo calls. It's just that we should not be calling foreign functions from different packages, because the may change without notice. Using getNativeSymbolInfo for "call_lsoda" avoids the CRAN note, and a similar call could probably be used for "unlock_solver", avoiding the NOTE in checks for cran, but we should not do this in a CRAN package. | |||||
| 2022-11-01 | Add tex_listing() | Johannes Ranke | 1 | -1/+1 | |
| 2022-11-01 | Add read_spreadsheet | Johannes Ranke | 1 | -1/+1 | |
| 2022-10-29 | Next version will be 1.2.0, complete NEWS | Johannes Ranke | 1 | -1/+1 | |
| 2022-10-26 | We don't use KernSmooth any more | Johannes Ranke | 1 | -2/+1 | |
| 2022-09-16 | Diagnostic plots for multistart method | Johannes Ranke | 1 | -2/+3 | |
| 2022-09-14 | Remove purrr dependency | Johannes Ranke | 1 | -2/+2 | |
| We now directly import from rlang and vctrs, which were indirect dependencies anyways. purrr::map_dfr is deprecated in the upcoming purrr 1.0, and depends on dplyr (since when?) which is only suggested by purrr. This would lead new installations of mkin to fail if dplyr is not installed as well. | |||||
| 2022-08-10 | Increase test coverage, require saemix version 3.1 | Johannes Ranke | 1 | -1/+1 | |
| 2022-07-26 | Import parallel instead of depending on it | Johannes Ranke | 1 | -4/+4 | |
| This cleans up the startup message. Loading parallel is not that important, users wanting to use it will know what to do. Also, add codemeta.json to .Rbuildignore | |||||
| 2022-07-21 | Summary method for mmkin objects | Johannes Ranke | 1 | -2/+2 | |
| Also, add a method for gathering convergence information and a method for gathering information on ill-defined parameters | |||||
| 2022-07-08 | Store DLL info in mkinmod objects for performance | Johannes Ranke | 1 | -2/+2 | |
| Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance. | |||||
| 2022-05-18 | Remove outdated comment in FOCUS L vignette, update docs | Johannes Ranke | 1 | -1/+1 | |
| This also adds the first benchmark results obtained on my laptop system | |||||
| 2022-04-09 | Improvements to mean_degparms() and plot.mixed.mmkin() | Johannes Ranke | 1 | -1/+1 | |
| - New argument 'default_log_parms' for mean_degparms() - 'plot.mixed.mmkin': Pass the frame argument also to residual plots, take the 'default_log_parms' argument for 'mean_degparms' used for constructing approximate population curves, plot population curve last to avoid that it is covered by data | |||||
| 2022-03-07 | Update maintainer e-mail address | Johannes Ranke | 1 | -1/+1 | |
| 2022-03-07 | Remove nlmixr interface for release of mkin 1.1.0 | Johannes Ranke | 1 | -2/+2 | |
| I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined). | |||||
| 2022-03-03 | More work to try to pass tests on R-devel winbuilder | Johannes Ranke | 1 | -1/+1 | |
| 2022-03-02 | Make tests more platform independent, update docs | Johannes Ranke | 1 | -1/+1 | |
| 2022-02-28 | Update docs | Johannes Ranke | 1 | -1/+1 | |
| 2022-02-09 | Adapt saemix interface to saemix 3.0 on CRAN | Johannes Ranke | 1 | -2/+2 | |
| 2021-10-01 | Bump date to update online dev docs | Johannes Ranke | 1 | -1/+1 | |
| 2021-09-16 | Merge branch 'master' into nlmixr | Johannes Ranke | 1 | -3/+3 | |
| 2021-09-15 | Update test result to corrected data, version bump | Johannes Ranke | 1 | -3/+3 | |
| 2021-07-29 | Add citations to the DESCRIPTION | Johannes Ranke | 1 | -3/+8 | |
| 2021-07-29 | Go back to 1.0.x version, update docs | Johannes Ranke | 1 | -2/+2 | |
| 2021-07-23 | Some example evaluations of dimethenamid data | Johannes Ranke | 1 | -2/+2 | |
| Evaluations with nlme, saemix and nlmixr are included | |||||
| 2021-06-12 | Small cosmetics | Johannes Ranke | 1 | -1/+1 | |
| 2021-06-11 | Finished 'summary.nlmixr.mmkin', checks, docs | Johannes Ranke | 1 | -1/+1 | |
| 2021-06-09 | Rudimentary support for setting up nlmixr models | Johannes Ranke | 1 | -5/+4 | |
| - All degradation models are specified as ODE models. This appears to be fast enough - Error models are being translated to nlmixr as close to the mkin error model as possible. When using the 'saem' backend, it appears not to be possible to use the same error model for more than one observed variable - No support yet for models with parallel formation of metabolites, where the ilr transformation is used in mkin per default - There is a bug in nlmixr which appears to be triggered if the data are not balanced, see nlmixrdevelopment/nlmixr#530 - There is a print and a plot method, the summary method is not finished | |||||
| 2021-04-21 | Merge branch 'master' into saemix | Johannes Ranke | 1 | -1/+1 | |
| 2021-04-21 | Version 1.0.4 published yesterdayv1.0.4 | Johannes Ranke | 1 | -1/+1 | |
| 2021-02-24 | Merge branch 'master' into saemix | Johannes Ranke | 1 | -2/+2 | |
| 2021-02-24 | Rebuild docs | Johannes Ranke | 1 | -2/+2 | |
| 2021-02-15 | Merge branch 'master' into saemix | Johannes Ranke | 1 | -2/+2 | |
| 2021-02-15 | Improve README, introductory vignette and some other docsv1.0.3 | Johannes Ranke | 1 | -2/+2 | |
| Also bump version to 1.0.3. | |||||
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index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
| aboutsummaryrefslogtreecommitdiff |
path: root/DESCRIPTION